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. 2009 Oct;15(10):1875–1885. doi: 10.1261/rna.1700409

FIGURE 5.

FIGURE 5.

Building steps of the deformation profile. (A) A predicted model (PM) will be compared with the reference model (RM). After superimposing PM over RM, minimizing the RMSD between nucleotides 2 (B) and 4 (C), the average distances between all atoms of corresponding nucleotides is calculated and recorded in DP matrix (D).