Table 1.

Frequencies of germline CNP at 2p24.3 in prostate cancer cases and controls

							Association test
	Cases			Controls			% of deletion carrier
	WW	WD	DD	WW	WD	DD	Cases	Controls	P-value
All cases
CAPS-GWAS	415	56	4	443	39	1	12.63%	8.28%	0.03
Remaining CAPS	2103	276	7	1078	129	6	11.86%	11.13%	0.52
JHH	1278	169	6	441	37	2	12.04%	8.13%	0.02
Total	3796	501	17	1962	205	9	12.01%	9.83%	0.009
Aggressive cases
CAPS-GWAS	415	56	4	443	39	1	12.92%	8.28%	0.03
Remaining CAPS	647	95	1	1078	129	6	12.88%	11.13%	0.23
JHH	849	110	6	441	37	2	12.02%	8.13%	0.02
Total	1911	261	11	1962	205	9	12.46%	9.83%	0.006
Non-aggressive cases
CAPS-GWAS	0	0	0	443	39	1	--	8.28%	--
Remaining CAPS	1456	181	6	1078	129	6	11.38%	11.13%	0.83
JHH	415	56	0	441	37	2	11.89%	8.13%	0.05
Total	1871	237	6	1962	205	9	11.49%	9.83%	0.08