Table 2.
Details of the Results of PLOP/VSGB and PLOP/GSGB Models for the 12-Residue Decoy Set.
| PDB ID | Beginning residue of loop | Ending residue of loop | Number of decoys | RMSDVSGB (Å) | RMSDGSGB (Å) |
|---|---|---|---|---|---|
| 1ixh_1 | 160 | 171 | 1152 | 0.49 | 0.49 |
| 1cex_1 | 40 | 51 | 1043 | 0.27 | 0.27 |
| 1arb_1 | 74 | 85 | 1148 | 0.22 | 0.22 |
| 7rsa_1 | 13 | 24 | 1152 | 0.44 | 0.43 |
| 1akz_1 | 181 | 192 | 552 | 0.42 | 0.41 |
| 153l_1 | 98 | 109 | 1152 | 0.28 | 0.28 |
| 1bkf_1 | 9 | 20 | 1152 | 1.16 | 1.16 |
| 1dad_1 | 204 | 215 | 1147 | 1.7 | 1.38 |
| 1dim_1 | 213 | 224 | 1152 | 0.24 | 0.24 |
| 1kuh_1 | 90 | 101 | 1102 | 0.81 | 0.81 |
| 2ayh_1 | 21 | 32 | 1151 | 0.38 | 0.38 |
| 351c_1 | 15 | 26 | 1146 | 0.74 | 0.9 |
| Average | 0.60 | 0.58 | |||
| STDEV | 0.45 | 0.39 |
The crystal packing environment is considered in the calculations.