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. Author manuscript; available in PMC: 2009 Sep 14.
Published in final edited form as: J Comput Chem. 2006 Jan 15;27(1):72–89. doi: 10.1002/jcc.20307

Table 2.

Details of the Results of PLOP/VSGB and PLOP/GSGB Models for the 12-Residue Decoy Set.

PDB ID Beginning residue of loop Ending residue of loop Number of decoys RMSDVSGB (Å) RMSDGSGB (Å)
1ixh_1 160 171 1152 0.49 0.49
1cex_1 40 51 1043 0.27 0.27
1arb_1 74 85 1148 0.22 0.22
7rsa_1 13 24 1152 0.44 0.43
1akz_1 181 192 552 0.42 0.41
153l_1 98 109 1152 0.28 0.28
1bkf_1 9 20 1152 1.16 1.16
1dad_1 204 215 1147 1.7 1.38
1dim_1 213 224 1152 0.24 0.24
1kuh_1 90 101 1102 0.81 0.81
2ayh_1 21 32 1151 0.38 0.38
351c_1 15 26 1146 0.74 0.9
Average 0.60 0.58
STDEV 0.45 0.39

The crystal packing environment is considered in the calculations.