Table 2.
Gene | WT G | WT | CRP* G | CRP* | WT G/WT | CRP* G/CRP* | CRP* G/WT G | CRP* G/WT |
aceA | 1806 | 3171 | 2584 | 1980 | 0.6 | 1.3 | 1.4 | 0.8 |
aceE | 7646 | 13291 | 10053 | 9167 | 0.6 | 1.1 | 1.3 | 0.8 |
acs | 56 | 223 | 203 | 386 | 0.3 | 0.5 | 3.6 | 0.9 |
aldA | 370 | 2471 | 937 | 1613 | 0.2 | 0.6 | 2.5 | 0.4 |
argD | 44 | 38 | 73 | 158 | 1.1 | 0.5 | 1.7 | 1.9 |
asnA | 594 | 1741 | 1409 | 1880 | 0.3 | 0.8 | 2.4 | 0.8 |
cheR | 1588 | 2315 | 2311 | 1007 | 0.7 | 2.3 | 1.5 | 1.0 |
cheY | 5365 | 6487 | 5893 | 2646 | 0.8 | 2.2 | 1.1 | 0.9 |
citF | 50 | 25 | 306 | 269 | 2.0 | 1.1 | 6.1 | 12.2 |
dhaM | 8790 | 1502 | 10556 | 3530 | 5.9 | 3.0 | 1.2 | 7.0 |
edd | 4178 | 756 | 3582 | 980 | 5.5 | 3.7 | 0.9 | 4.7 |
fruA | 3105 | 1289 | 5777 | 3659 | 2.4 | 1.6 | 1.9 | 4.5 |
fruK | 3722 | 1934 | 6807 | 3866 | 1.9 | 1.8 | 1.8 | 3.5 |
fumA | 956 | 3284 | 4013 | 3738 | 0.3 | 1.1 | 4.2 | 1.2 |
gapC | 1316 | 581 | 2345 | 2383 | 2.3 | 1.0 | 1.8 | 4.0 |
gatD | 1560 | 475 | 6080 | 7981 | 3.3 | 0.8 | 3.9 | 12.8 |
gatR | 1776 | 786 | 6106 | 5039 | 2.3 | 1.2 | 3.4 | 7.8 |
gcd | 491 | 467 | 171 | 67 | 1.1 | 2.5 | 0.4 | 0.4 |
glnP | 2682 | 1037 | 1108 | 1374 | 2.6 | 0.8 | 0.4 | 1.1 |
glpC | 564 | 8563 | 5595 | 13130 | 0.1 | 0.4 | 9.9 | 0.7 |
glpF | 738 | 12693 | 2384 | 10944 | 0.1 | 0.2 | 3.2 | 0.2 |
glpG | 1225 | 895 | 938 | 1426 | 1.4 | 0.7 | 0.8 | 1.1 |
glpK | 360 | 8374 | 1579 | 8395 | 0.04 | 0.2 | 4.4 | 0.2 |
glpQ | 159 | 4424 | 1747 | 9315 | 0.04 | 0.2 | 11.0 | 0.4 |
glpT | 54 | 4285 | 893 | 9145 | 0.01 | 0.1 | 16.5 | 0.2 |
gltB | 3219 | 2423 | 3388 | 1487 | 1.3 | 2.3 | 1.1 | 1.4 |
gltD | 1881 | 1282 | 1829 | 595 | 1.5 | 3.1 | 1.0 | 1.4 |
glyA | 1613 | 3148 | 3353 | 3448 | 0.5 | 1.0 | 2.1 | 1.1 |
gntK | 631 | 217 | 670 | 259 | 2.9 | 2.6 | 1.1 | 3.1 |
gntP | 87 | 354 | 321 | 799 | 0.2 | 0.4 | 3.7 | 0.9 |
gntU | 334 | 98 | 260 | 126 | 3.4 | 2.1 | 0.8 | 2.7 |
guaB | 4670 | 7698 | 2558 | 1733 | 0.6 | 1.5 | 0.6 | 0.3 |
ldhA | 1823 | 1281 | 6014 | 3669 | 1.4 | 1.6 | 3.3 | 4.7 |
maeB | 579 | 1420 | 1509 | 1839 | 0.4 | 0.8 | 2.6 | 1.1 |
malF | 2381 | 2353 | 7365 | 9358 | 1.0 | 0.8 | 3.1 | 3.1 |
manZ | 3993 | 2734 | 12806 | 9993 | 1.5 | 1.3 | 3.2 | 4.7 |
mdh | 5878 | 9397 | 12603 | 15821 | 0.6 | 0.8 | 2.1 | 1.3 |
mglA | 10 | 592 | 400 | 1205 | 0.02 | 0.3 | 40.0 | 0.7 |
mglB | 38 | 1376 | 1529 | 4340 | 0.03 | 0.4 | 40.3 | 1.1 |
nrfE | 783 | 21 | 531 | 754 | 36.5 | 0.7 | 0.7 | 24.7 |
nrfF | 2460 | 41 | 1177 | 2267 | 59.7 | 0.5 | 0.5 | 28.6 |
nrfG | 611 | 10 | 216 | 435 | 58.6 | 0.5 | 0.4 | 20.7 |
pntA | 3946 | 6915 | 7400 | 7086 | 0.6 | 1.0 | 1.9 | 1.1 |
pntB | 1736 | 2546 | 3057 | 3083 | 0.7 | 1.0 | 1.8 | 1.2 |
ppsA | 247 | 6026 | 1325 | 3494 | 0.04 | 0.4 | 5.4 | 0.2 |
proA | 2536 | 2397 | 13 | 12 | 1.1 | 1.1 | 0.01 | 0.01 |
proB | 3589 | 3092 | 7 | 4 | 1.2 | 1.9 | 0.00 | 0.00 |
ptsG | 13731 | 3926 | 16556 | 5403 | 3.5 | 3.1 | 1.2 | 4.2 |
rpsQ | 6405 | 12505 | 9398 | 7652 | 0.5 | 1.2 | 1.5 | 0.8 |
sdhA | 1033 | 7257 | 3292 | 3154 | 0.1 | 1.0 | 3.2 | 0.5 |
sdhB | 895 | 5161 | 2407 | 2521 | 0.2 | 1.0 | 2.7 | 0.5 |
sdhD | 556 | 5466 | 2568 | 1980 | 0.1 | 1.3 | 4.6 | 0.5 |
serA | 2256 | 956 | 1638 | 793 | 2.4 | 2.1 | 0.7 | 1.7 |
serC | 3904 | 2365 | 3230 | 1738 | 1.7 | 1.9 | 0.8 | 1.4 |
srlA | 174 | 4601 | 313 | 3037 | 0.04 | 0.1 | 1.8 | 0.1 |
sthA | 3236 | 3764 | 1936 | 2741 | 0.9 | 0.7 | 0.6 | 0.5 |
sucA | 3988 | 8390 | 4822 | 4421 | 0.5 | 1.1 | 1.2 | 0.6 |
tdcA | 74 | 4064 | 3412 | 8483 | 0.02 | 0.4 | 45.9 | 0.8 |
tdcB | 147 | 4614 | 7708 | 13552 | 0.03 | 0.6 | 52.4 | 1.7 |
tdcE | 95 | 397 | 3932 | 11414 | 0.2 | 0.3 | 41.4 | 9.9 |
tdcG | 126 | 182 | 3018 | 14708 | 0.7 | 0.2 | 23.9 | 16.6 |
thiC | 163 | 179 | 212 | 455 | 0.9 | 0.5 | 1.3 | 1.2 |
thiE | 136 | 140 | 183 | 412 | 1.0 | 0.4 | 1.4 | 1.3 |
thrA | 812 | 2686 | 1997 | 1279 | 0.3 | 1.6 | 2.5 | 0.7 |
thrB | 849 | 2857 | 2165 | 1353 | 0.3 | 1.6 | 2.6 | 0.8 |
thrC | 783 | 1722 | 1594 | 1378 | 0.5 | 1.2 | 2.0 | 0.9 |
tnaA | 688 | 16366 | 10805 | 23343 | 0.04 | 0.5 | 15.7 | 0.7 |
tnaB | 74 | 3825 | 1957 | 9810 | 0.02 | 0.2 | 26.6 | 0.5 |
treB | 4465 | 17280 | 4711 | 19044 | 0.3 | 0.3 | 1.1 | 0.3 |
treC | 3007 | 12164 | 2606 | 15416 | 0.3 | 0.2 | 0.9 | 0.2 |
Upd | 11584 | 3965 | 4736 | 6483 | 2.9 | 0.7 | 0.4 | 1.2 |
ymfL | 29 | 56 | 364 | 71 | 0.5 | 5.1 | 12.5 | 6.6 |
ymfO | 114 | 177 | 961 | 137 | 0.7 | 7.0 | 8.4 | 5.4 |
Four different conditions were tested: W3110 in LB+glucose medium (WT G), W3110 in LB medium (WT), PC05 in LB+glucose medium (CRP* G), and PC05 in LB medium (CRP*)