Table 4.
M2 duration HMM sequence alignment modifications.
| CT | Name | To TLS | -35 Hex | Spacer (16-20) | -10 Hex |
| CT323 | infA | 145 | TTGACA | TTTTCTGTTTAGTCGA(16) | TATAAT |
| 149 | TTGTTT | GACATTTTCTGTTTAGTCGA(20) | TATAAT | ||
| CT377 | ltuA | 74 | TGCAGA | GTTTTTATTTTAAATATGT(19) | TATAAT |
| 75 | TTGCAG | AGTTTTTATTTTAAATATGT(20) | TATAAT | ||
| CT442 | crpA | 66 | GGGTTT | TTGAAAAAAACAAGTGTTT(19) | GTGTAG |
| 60 | TTGAAA | AAAACAAGTGTTTGTG(16) | TAGACT | ||
| CT444b | omcA | 61 | AATTGC | TTTTATCGATAAAAGAAAC(19) | TTCAAG |
| 59 | TTGCTT | TTATCGATAAAAGAAAC(17) | TTCAAG | ||
| CT518 | rl14 | 198 | CTGTTG | TTGTTCGAGTCGAAAGGG(18) | TATACT |
| 195 | TTGTTG | TTCGAGTCGAAAGGGTA(17) | TACTCG | ||
| CT701 | secA_2 | 57 | TGTATA | GGCGCCTTTAAATAAGAGGG(20) | TAGGTT |
| 61 | TTGTTG | TATAGGCGCCTTTAAA(16) | TAAGAG | ||