Table 5.

Comparison of M2 Cross-Validation and predictions of comparable algorithms for 25 training set genes.

CT	HMM2 SCORE	M2 Cross-Validation	NNPP2.2	TSS-PREDICT	Footy
CT046	-1.6	1/1	0/4	0/2	0/0
CT062	4.0	1/2	0/0	1/1	1/1
CT080	0.5	1/2	1/4	0/2	0/0
CT091	1.3	1/3	1/1	1/1	0/0
CT098	3.7	1/1	0/1	1/2	1/1
CT111	-1.0	1/1	1/3	0/2	1/1
CT286	1.2	1/1	1/2	1/1	1/1
CT322	-2.1	0/0	0/0	0/2	0/0
CT323	1.6	1/1	1/3	1/1	1/1
CT377	5.3	1/2	1/3	1/1	0/0
CT394	-1.5	1/1	1/2	1/1	0/0
CT439m	1.8	1/1	0/3	0/0	1/1
CT442	-0.9	1/2	1/1	1/1	0/0
CT444	3.2	2/5	2/5	1/2	0/0
CT518	-4.2	1/1	0/0	1/1	0/0
CT557	-3.4	1/1	0/1	1/1	0/0
CT559	-2.7	1/1	1/1	0/2	1/1
CT576	0.6	1/2	1/3	1/2	0/0
CT596	0.5	1/1	0/1	0/2	1/1
CT674	4.0	1/2	1/2	0/0	0/0
CT701	-3.3	1/1	1/2	0/2	0/0
CT708	2.6	1/1	1/2	1/1	1/1
CT743	-3.8	0/0	0/2	1/5	0/0
CT752	-3.5	0/0	1/1	0/2	1/1
CT863	4.0	1/1	1/1	1/1	0/0
Sensitivity		23/26 (0.89)	17/26 (0.65)	15/26 (0.58)	10/26 (0.39)
Precision		23/34 (0.68)	17/48 (0.35)	15/38 (0.40)	10/10 (1.0)