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. 2009 Aug 6;10:363. doi: 10.1186/1471-2164-10-363

Table 1.

List of transcripts modulated by DIMEB and reported in the Discussion

IDa Description Uniprot IDb TC-IDc 2 h 6 h
+ + -
Signal trasduction
CLU090 Kinase associated protein phosphatase P46014 EC987592 x
1608981_at Putative phospholipase Q8RXN7 TC69626 x
1620080_at Putative receptor-like protein kinase ARK1 Q5ZAK8 CB922377 x
1611172_at SOS2-like protein kinase Q8LK24 TC52484 x
Transcription factors
1619311_at Pathogenesis-related genes transcriptional activator PTI5 O04681 TC55556 x
1611285_s_at Probable WRKY transcription factor 11 Q9SV15 TC65678 x
CLU059 TGA10 transcription factor Q52MZ2 TC99087 x
1610775_s_at WRKY transcription factor-b Q5DJU0 TC55553 x
Effector genes
Phe biosynthesis
CLU083 3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase precursor O24051 TC74975 x
1611211_at 3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase precursor O24046 TC57386 x
1614440_at 3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase Q6YH16 TC54321 x
1619357_at 3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase O24046 TC57642 x
1621405_at Plastidic 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2 O22407 TC51974 x
1609646_at 3-Dehydroquinate synthase-like protein Q9FKX0 TC56854 x
1609932_at Prephenate dehydratase Q6JJ29 TC53641 x
1621307_at Prephenate dehydratase Q6JJ29 TC53641 x
1611895_at Putative chorismate mutase Q5JN19 TC62307 x
General phenylpropanoid metabolism
1613113_at Phenylalanine ammonia lyase Q6UD65 TC60180
CLU024 Trans-cinnamate 4-monooxygenase Q43240 TC71512 x
1610821_at Cinnamic acid 4-hydroxylase Q948S8 TC70715 x
1616191_s_at Cinnamic acid 4-hydroxylase Q948S8 TC70715 x
1615801_at 4-Coumarate:CoA ligase Q5S017 TC60943 x
1619320_at 4-Coumarate--CoA ligase 2 P31687 TC66743 x
Stilbene biosynthesis
CLU009 Stilbene synthase Q9SPW2 TC89701 x
CLU022 Stilbene synthase Q6BAU9 TC89632 x
CLU023 Stilbene synthase P28343 TC84974 x
CLU049 Stilbene synthase Q8LPP4 TC78210 x
CLU097 Stilbene synthase Q9S982 TC84974 x
CLU103 Stilbene synthase P28343 TC88894 x
1606750_at Stilbene synthase Q6BAL2 TC67020 x
1608009_s_at Stilbene synthase P51070 x
1609696_x_at Stilbene synthase P28343 TC67020 x
1609697_at Stilbene synthase Q944W7 TC60946 x
1610824_s_at Stilbene synthase Q93YX5 TC52746 x
1610850_at Stilbene synthase P28343 x
1611190_s_at Resveratrol synthase Q94G58 TC67020 x
1612804_at Stilbene synthase Q9SPW2 TC52746 x
1614621_at Stilbene synthase P28343 TC67020 x
1616575_at Stilbene synthase Q944W7 TC52746 x
1620964_s_at Stilbene synthase P28343 x
1622638_x_at Stilbene synthase Q9SPW2 TC52746 x
Secondary metabolite transport
CLU106 PDR-like ABC transporter Q8GU88 TC76318 x
CLU119 Pleiotropic drug resistance protein 12 Q5Z9S8 TC81892 x
1613763_at ABC transporter-like protein Q9LYS2 TC60768 x
1618493_s_at ABC transporter-like protein Q9LYS2 TC64210 x
1610363_at CjMDR1 Q94IH6 TC69843 x
1609330_at Glutathione S-transferase Q6YEY5 NP864091 x
1611890_at Glutathione S-transferase GST 14 Q9FQE4 TC61062 x
1619682_x_at Caffeic acid O-methyltransferase Q9M560 TC52364 x
1620342_at Caffeic acid 3-O-methyltransferase 1 Q00763 TC64352 x
Lignin biosynthesis
1611897_s_at Caffeoyl-CoA O-methyltransferase Q8H9B6 TC63685 x
1614643_at Caffeoyl-CoA O-methyltransferase Q43237 TC51729 x
1613900_at Cinnamyl alcohol dehydrogenase Q9ATW1 TC52904 x
1614045_at Ferulate 5-hydroxylase Q6IV45 TC64493 x
1614502_at Ferulate 5-hydroxylase Q6IV45 TC63764 x
1619065_at Putative cinnamoyl-CoA reductase Q8W3H0 TC53437 x
1622651_at Polyphenol oxidase Q68NI4 TC58764 x
1610806_at Putative diphenol oxidase Q6Z8L2 CD007812 x
CLU122 Chalcone-flavonone isomerase P51117 TC78712 x
CLU048 Flavonol 3-O-glucosyltransferase 6 Q40288 TC85607 x
1621051_at Flavonol 3-O-glucosyltransferase 2 Q40285 CN006197 x
Defence response
CLU088 Chitinase (Class II) Q43322 TC95665 x
1613871_at Class IV chitinase Q9M2U5 TC57889 x
1617192_at Class IV chitinase Q7XB39 TC63731 x
1617430_s_at Basic endochitinase precursor P51613 TC51704 x
CLU001 Pathogenesis-related protein10 Q9FS42 TC72098 x
1610011_s_at Pathogenesis-related protein10 Q9FS42 x
1618568_s_at Pathogenesis-related protein10 Q9FS42 x
CLU021 Pathogenesis-related protein PR-4A precursor P29062 TC91296 x
CLU036 Merlot proline-rich protein 2 Q6QGY1 TC85591 x
1609875_at Protease inhibitor Q6YEY6 x
1611666_s_at Protease inhibitor Q6YEY6 TC70006 x
1612552_at Putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase Q9C9W8 TC57170 x
1620309_at Putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase Q9C9W8 TC63451 x
1622147_at 1-Aminocyclopropane-1-carboxylate oxidase 3 Q08507 TC60326 x
1616358_at MLO-like protein 11 Q9FI00 BQ798612 x
Cell wall metabolism
1608074_s_at Expansin Q84UT0 TC62965 x
1620840_at Alpha-expansin Q8LKJ8 TC53122 x
1615995_at Xyloglucan endotransglycosylase XET2 Q9LLC2 CF212592 x
1620003_at Xyloglucan endotransglycosylase 1 Q9ZRV1 TC63269 x
1608799_at Pectin methylesterase Q96497 TC58800 x
1619468_at Pectin methylesterase PME1 Q94B16 TC53043 x
1619522_at Putative beta-galactosidase BG1 Q94B17 TC56838 x
1608756_at Polygalacturonase-like protein Q84LI7 TC59719 x
1606763_at Putative beta-1,3-glucanase Q8L868 TC67051 x
1609506_at Putative cellulase CEL2 Q94B13 NP596365 x
1610263_at Putative beta-1,3-glucanase Q8L868 TC67051 x
Cell duplication
1612320_a_at Tubulin alpha chain P33629 TC57547 x
1616815_at Tubulin beta-8 chain Q41785 TC55048 x
1618413_at Tubulin alpha chain P33629 TC63601 x
1619167_at Tubulin beta-8 chain Q41785 TC62643 x
1621015_at Alpha-tubulin 1 Q8H6M1 TC65238 x
1622466_at Tubulin beta-8 chain Q41785 TC62809 x
1608927_at Putative histone H2A Q6L500 TC53574 x
1612573_at Histone H3 A2Y533 TC56731 x
1613041_at Histone H4 Q76H85 TC61904 x
1613076_at Histone H4 Q76H85 TC62637 x
1620332_at Histone H3 A2Y533 TC59489 x
1622440_at Histone H3 A2Y533 TC64779 x
1622737_at Histone H2B O22582 TC64405 x
1610854_at Proliferating cell nuclear antigen P22177 TC54817 x
1610422_at Patellin-6 Q9SCU1 TC61622 x
1610607_at Gip1-like protein Q93WR4 TC66111 x
1613373_at Formin-like protein 1 Q8S0F0 TC55249 x
1607792_at Putative DNA polymerase alpha catalytic subunit O48653 TC59012 x

aCluster or Affy ID of transcripts modulated at 2 or 6 h. (+) and (-) refer to up- and down-regulation in the treated sample with respect to the control.

bUniprotID [73]of the first hit obtained by “Blast” analysis.

cTC: corresponding grapevine Tentative Consensus sequence obtained by a search (BlastN) against the Grape Gene Index database [75].