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. 2009 Sep 1;10:274. doi: 10.1186/1471-2105-10-274

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Copyright © 2009 Blum et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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PhyloLoc and GOLoc architecture. The architectures of PhyloLoc and GOLoc from MultiLoc2-LowRes. The input of PhyloLoc is a vector of similarities (phylogenetic profile) between the query sequence and the best sequence match in each genome inferred from BLAST. The input of GOLoc is a binary-coded vector representing the GO terms of the query sequence inferred from InterPro using InterProScan. PhyloLoc and GOLoc use one-versus-one SVMs to process their input and to calculate probability estimates for each localization.