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Limited conservation between the Pta 11528 genome sequence and the sequence of the Pph 1448A large plasmid. The MAQ [79] alignment of the Pta 11528 Illumina reads is shown in black. The thickness of the black track is proportional to the depth of coverage by Illumina reads. The BLASTN [80] alignment of the Pta 11528 de novo assembly against the plasmid sequence is shown in a green track, with the thickness of this single green track being proportional to sequence identity.
