Table 1.
Features of sHsps and Acds genes of rice
|
Protein name |
Gene ID (TIGR) |
Chromosome location and orientation | Intron* | FL-cDNA |
| sHsps | ||||
| Hsp16.6-CVIII | Os01g04340 | 1: (+) 1933247–1933699 | NI | AK063681 |
| Hsp17.9B-CIX | Os01g04350 | 1: (+) 1940149–1940649 | NI |
AK119599, AK064849, AK065690, AK062091 |
| Hsp16.9C-CI | Os01g04360 | 1: (-) 1943473–1943922 | NI | n/a |
| Hsp16.9A-CI | Os01g04370 | 1: (-) 1948005–1948457 | NI | n/a |
| Hsp16.9B-CI | Os01g04380 | 1: (+) 1951047–1951499 | NI | AK121025 |
| Hsp18.0-CII | Os01g08860 | 1: (-) 4448290–4448790 | NI | AK071240, DQ180746 |
| Hsp18.8-CX | Os02g03570 | 2: (+) 1450233–1450766 | NI | n/a |
| Hsp23.6-MII | Os02g10710 | 2: (-) 5639315–5640360 | SI [97(386n)122] | AK106682 |
| Hsp19.0-CII | Os02g12610 | 2: (-) 6616538–6617065 | NI | CT835445 |
| Hsp17.8-CXI |
Os02g48140.1 Os02g48140.2 |
2: (+) 30355328–30355822 |
NI |
CI140562 AK107963 |
| Hsp24.0-MI | Os02g52150 | 2: (+) 32807782–32808549 | SI [83(105n)137] |
AK105464, AK074003, AK064389 |
| Hsp18.6-CIII | Os02g54140 | 2: (+) 34066403–34067009 | SI [82(87n)90] | AK119261, AK063602 |
| Hsp26.7-P | Os03g14180 | 3: (+) 7746457–7747179 | NI |
AK063618, AK120045, AK120048, AB020973 |
| Hsp17.9A-CI | Os03g15960 | 3: (+) 8856447–8856932 | NI |
AK104129, AK119616, AK119664, AK073671, AK119239, AK119675 |
| Hsp17.4-CI | Os03g16020 | 3: (-) 8884576–8885040 | NI | AK119243, AK119717 |
| Hsp18.0-CI | Os03g16030 | 3: (+) 8885608–8886093 | NI | n/a |
| Hsp17.7-CI | Os03g16040 | 3: (+) 8888694–8889173 | NI | AK069547 |
| Hsp23.2-ER | Os04g36750 | 4: (+) 22300635–22301282 | NI | AK063700 |
| Hsp22.3-CVI | Os05g42120 | 5: (+) 24674434–24675920 | SI [111(875n)92] | AK110627 |
| Hsp26.2-MI | Os06g11610 | 6: (-) 6151339–6152222 | SI [103(137n)145] | n/a |
| Hsp16.0-Px | Os06g14240 | 6: (-) 7940169- 7940609 | NI | AK105317 |
| Hsp18.8-CV |
Os07g33350.1 Os07g33350.2 |
7: (+) 20595735–20596341 |
SI [73(85n)100] |
AK099296 AK063798 |
| Hsp21.8-ER | Os11g13980 | 11: (-) 7752380–7753000 | NI | AK107883 |
| Acds | ||||
| Acd18.1 | Os01g40530 | 1: (-) 24554327–24555689 | SI | n/a |
| Acd29.4 | Os01g40550 | 1: (-) 24558012–24558960 | SI | AK109917 |
| Acd58.3 | Os01g62300 | 1: (-) 37800329–37801894 | NI | AK069954, AK103961 |
| Acd52.9 | Os02g48370 | 2: (-) 30498592–30502991 | MI | AK107036 |
| Acd19.1 | Os03g61940 | 3: (-) 35964494–35965033 | NI | n/a |
| Acd41.4 | Os03g45330 | 3: (-) 26352936–26356577 | SI | n/a |
| Acd31.8 | Os03g45340 | 3: (-) 26360084–26361059 | SI | AK062338 |
| Acd22.6 | Os03g06170 | 3: (-) 3074366–3075216 | SI | n/a |
| Acd34.9 | Os05g51440 | 5: (+) 29576192–29577284 | SI | n/a |
| Acd50.4 | Os06g41730 | 6: (+) 25891207–25895963 | MI |
AK073058, AK099075, AK101550, AK064549 |
| Acd21.5 | Os09g17660 | 9: (+) 11366789–11367960 | SI | n/a |
| Acd38.4 | Os10g07200 | 10: (-) 3758835–3760441 | SI | AK064267 |
| Acd21.0 | Os10g07210 | 10: (-) 3764967–3766298 | SI | AK107162 |
| Acd18.0 | Os10g30162 | 10: (+) 16138850–16140552 | SI | AK062774 |
| Acd19.4 | Os10g30180 | 10: (+) 16145983–16147060 | SI | n/a |
| Acd50.7 | Os12g06820 | 12: (-) 3316867–3318361 | SI | AK110577 |
| Acd30.2 | n/a | n/a | AK109077 | |
n/a – not available, NI – no intron, SI – single intron, MI – multiple introns, C – cytoplasm/nuclear, M – mitochondria, ER – endoplasmic reticulum, P – chloroplast, Px – peroxisome. * The number in bracket shows the intron length in nucleotides. Numbers preceding and following the bracket represent exon1 and exon2 (in amino acids), respectively.