Appendix 1.
Chromosome position a | rs# in dbSNP | Location | Allele b | MAF in cases | MAF in controls | PHWE for cases | PHWE for controls | Call rate (%) |
---|---|---|---|---|---|---|---|---|
PGR gene: | rs11224561 | 3’ flanking | C/T | 0.29 | 0.32 | 0.47 | 0.16 | 99.51 |
Chr11:100,414,312..100,506,464 | rs471767 | 3’ flanking | G/A | 0.05 | 0.06 | 0.40 | 0.76 | 99.85 |
rs12223699 | intron 6 | C/T | 0.10 | 0.10 | 0.96 | 0.29 | 99.95 | |
rs11571234 | intron 4 | A/T | 0.16 | 0.16 | 0.46 | 0.96 | 100.00 | |
rs547378 | intron 4 | A/G | 0.22 | 0.22 | 0.41 | 0.31 | 99.90 | |
rs11224579 | intron 3 | C/T | 0.26 | 0.26 | 0.32 | 0.99 | 99.95 | |
rs11224598 | intron 2 | C/T | 0.20 | 0.20 | 0.17 | 0.71 | 100.00 |
Version of NCBI Build 36.
Bolded alleles are minor alleles.