Table 1.
Taxon | Assembly size (Mb) | Deserts (n) | Deserts (%) | 18S GenBank accession number |
---|---|---|---|---|
P. troglodytes | 3175.6 | 949 | 36.80 | AC183378 |
H. sapiens | 3047.0 | 915 | 38.33 | NR_003286 |
M. mulatta | 2863.7 | 810 | 30.44 | CN805008 |
M. musculus | 2654.9 | 895 | 34.26 | NR_003278 |
R. norvegicus | 2718.9 | 743 | 23.19 | X01117 |
C. lupus familaris | 2445.1 | 552 | 20.14 | DQ287955 |
B. taurus | 2422.9 | 149 | 4.26 | DQ222453 |
E. caballus | 2367.1 | 573 | 23.13 | AJ311673 |
M. domestica | 3431.4 | 1098 | 27.77 | AJ311676 |
O. anatinus | 1843.0 | 161 | 8.37 | AJ311679 |
G. gallus | 1031.9 | 200 | 16.13 | AF173612 |
D. rerio | 1277.1 | 129 | 7.10 | XR_045186 |
O. latipes | 724.2 | 29 | 6.06 | AB105163 |
G. aculeatus | 400.9 | 0 | 0.00 | DW607648 |
T. nigroviridis | 217.4 | 5 | 1.17 | AJ270032 |
C. intestinalis | 938.1 | 0 | 0.00 | AB013017 |
A. gambiae | 228.2 | 0 | 0.00 | AM157179 |
D. melanogaster | 120.4 | 0 | 0.00 | EU188739 |
C. elegans | 100.3 | 0 | 0.00 | AY284652 |
C. briggsae | 91.2 | 0 | 0.00 | U13929 |
A. fumigatus | 29.4 | 0 | 0.00 | NT_166520 |
C. glabrata | 12.3 | 0 | 0.00 | AF114470 |
S. cervisiae | 12.1 | 0 | 0.00 | J01353 |
Z. mays | 1979.4 | 0 | 0.00 | NC_008332 |
A. thaliana | 119.2 | 0 | 0.00 | X16077 |
O. sativa | 370.8 | 0 | 0.00 | AY120865 |
V. vinifera | 303.1 | 0 | 0.00 | AF321270 |
O. lucimarinus | 13.2 | 0 | 0.00 | DQ007077 |
L. major | 32.8 | 0 | 0.00 | NC_007268 |
P. falciparum | 22.9 | 0 | 0.00 | NC_004325 |
Deserts (n)—number of gene deserts (>500 kB) in a given genome; deserts (%)—size fraction of gene deserts (>500 kB) in a given genome; 18S acc. no
aGenBank accession numbers of 18S sequences used for regression equation mapping are also given. Data were obtained from GenBank. Note that no information on the size of intergenic regions was available for A. thaliana, A. fumigatus, L. ajor, O. sativa, and Z. mays. Also note that assembly size does not necessarily equal actual genome size