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. Author manuscript; available in PMC: 2010 Aug 1.
Published in final edited form as: Bioorg Med Chem. 2009 Jun 21;17(15):5583–5597. doi: 10.1016/j.bmc.2009.06.026

Table 4.

Feature frequencies employed in developing the pharmacophore model

Typea Minimum Maximum Feature matching tolerance (Å)

A 0 3 2.00
D 0 3 2.00
H 1 2 for μ, 3 for κ 2.50
N 0 0 1.75
P 1 3 1.75
R 1 for μ, 0 for κ 3 2.50
a

A: hydrogen bond acceptor; D: hydrogen bond donor; H: aliphatic hydrophobic group; N: negatively ionizable group; P: positively ionizable group; R: aromatic hydrophobic group