Table 3.
Fitness of the trees resulting from maximum parsimony searches with different gap opening penalties (OP) and gap extension penalties (OF) (FFT-NS-i, JTT200).
| OP | OF | Number of trees | Length | CI | RI | RC | HI | G-fit |
|---|---|---|---|---|---|---|---|---|
| 1.0 | 0 | 3 | 5098 | 0.675 | 0.498 | 0.336 | 0.325 | −245.815 |
| 1.0 | 0.5 | 1 | 5219 | 0.628 | 0.483 | 0.303 | 0.372 | −206.925 |
| 1.0 | 1 | 1 | 5217 | 0.625 | 0.479 | 0.3 | 0.375 | −197.856 |
| 2.0 | 0 | 11 | 5227 | 0.649 | 0.489 | 0.317 | 0.351 | −226.988 |
| 2.0 | 0.5 | 4 | 5281 | 0.632 | 0.485 | 0.306 | 0.368 | −206.599 |
| 2.0 | 1 | 1 | 5272 | 0.637 | 0.489 | 0.312 | 0.363 | −204.882 |
| 3.0 | 0 | 7 | 5354 | 0.658 | 0.491 | 0.323 | 0.342 | −239.881 |
| 3.0 | 0.5 | 4 | 5280 | 0.64 | 0.49 | 0.314 | 0.36 | −210.476 |
| 3.0 | 1 | 12 | 5317 | 0.639 | 0.483 | 0.308 | 0.361 | −206.114 |