TABLE 2.
Statistical analysis of bacterial lineages changing in abundance during infection, treating each mouse as a data point
| Days p.i. | Location | Site | Level | Lineage | P | Change upon infection |
|---|---|---|---|---|---|---|
| 9 | Tissue | Cecum | Class | Clostridia | 0.0253 | Down |
| Proximal colon | Phylum | Deferribacteres | 0.0339 | Up | ||
| Class | Deferribacteres | 0.0339 | Up | |||
| Family | Deferribacteraceae | 0.0339 | Up | |||
| Clostridiaceae | 0.0339 | Up | ||||
| Luminal content | Cecum | Phylum | Deferribacteres | 0.0275 | Up | |
| Class | Deferribacteres | 0.0275 | Up | |||
| Family | Deferribacteraceae | 0.0275 | Up | |||
| Clostridiaceae | 0.0143 | Up | ||||
| Distal colon | Phylum | Proteobacteria | 0.0143 | Up | ||
| Class | Gammaproteobacteria | 0.0275 | Up | |||
| Bacilli | 0.0500 | Down | ||||
| Clostridia | 0.0275 | Up | ||||
| Family | Other Proteobacteria | 0.0275 | Up | |||
| Clostridiaceae | 0.0275 | Up | ||||
| Lachnospiraceae | 0.0500 | Up | ||||
| Lactobacillaceae | 0.0500 | Down | ||||
| Other Firmicutes | 0.0143 | Up | ||||
| 14 | Luminal content | Cecum | Phylum | Deferribacteres | 0.0283 | Up |
| Other Bacteria | 0.0163 | Up | ||||
| Class | Deferribacteres | 0.0283 | Up | |||
| Other Bacteria | 0.0163 | Up | ||||
| Family | Deferribacteraceae | 0.0283 | Up | |||
| Other Bacteria | 0.0163 | Up | ||||
| Proximal colon | Phylum | Deferribacteres | 0.0500 | Up | ||
| Class | Deferribacteres | 0.0500 | Up | |||
| Family | Deferribacteraceae | 0.0500 | Up | |||
| Other Firmicutes | 0.0500 | Up | ||||
| Distal colon | Phylum | Other Bacteria | 0.0500 | Up | ||
| Family | Other Bacteria | 0.0500 | Up |