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. 2009 Sep 10;10:425. doi: 10.1186/1471-2164-10-425

Table 2.

Correlations between SP properties and measured extracellular NucA activities.a

Ranked after NucA activityb Lenght of SPs pI of SPs Hydro-phobicityc Length of N-domaind Net charge of the N-domaind Charge/length of the N-domaind Length of H-plus C-domainsd
1-10 34.5 9.8 2.98 7.2 3.1 0.5 27
65-78 32.8 10.1 2.31 9.9 3.0 0.4 23
1-39 31.6 10.3 2.77 7.4 2.9 0.5 24
40-78 31.1 10.1 2.26 9.1 3.0 0.4 22
1-78 31.3 10.2 2.52 8.3 3.0 0.4 23

aAverage values for different properties were calculated for SPs grouped by NucA activity.

bSubgroups of the 78 SPs were made as indicated, with SPs being numbered by their ability to produce extracellular NucA activity, with SP number 1 having the highest activity; see text for further details.

c The hydrophobicity of the SPs was estimated using the ProtScale program [66] using the Kyte & Doolittle scale [67] on the ExPASy Server http://www.expasy.ch/tools/protscale.html. The numbers indicate the maximum hydrophobicity value, using a sliding window size of seven.

d See text for definition of the domains. Nb. We verified that the length of the H+C domain is not correlated to the maximum hydrophobicity defined in footnote c (results not shown).