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. 2009 Sep 2;10:87. doi: 10.1186/1471-2199-10-87

Table 1.

Primers used for amplification of sequences for each AcMNPV locus used and restriction enzyme site used for insertion of reporter and expression cassettes.

Locus Forward Primer Reverse primer Restriction enzymes used
ctx CACTTGACTCGATTGCGCG TATTTATTGTCTACATGAACACG m*EcoRV
orf11 GTTGCACCTTTGACGAAGCGG TCACAATCCATAACACACAACAGG m* EcoRV
egt ATGTGCGACCATTGTTGGGC GTTGTCACATCTGACTACTCC pd
orf23 AGAGTGCGTTAATCTGTACACC ATCATAGGGTACAACACAGG StuI/SfoI
v-fgf CCGGCAAAATCAAAGCGAGC GATTACACGTGACATTTACGATGG m* EcoRV
39k CCTGGTAATTTTTGACCACG CGCAGCAATTCCAGCGAGC m* EcoRV
orf51 AAATGACTAGACAAGAAATTGCC AGTTGTACAAATCACAAATATAAAAG BmgBI
gp37 ATTGACGGGCCGTCGGCACG CGATCATGCAAAAGTACATGC m* EcoRV
iap2 CCGCGGCTAAGCGTTAAACC TTCGAATACGTGTGTCGTTTAATTTGC BstBI/SacII
chiA TAAACGCTCCGACTCTGTGG CGAGGGCCGCGGCCAGTGGGTC pd
pe GCATTTTTCCAATGTGGTAGACG CTTTAGCGGTTTCCAACGCC m* EcoRV
odv-e18 TCTCAAACACGGTGCCTGC TCGTTGGTTTCAGTGACCAC m* EcoRV
odv-e56 CAACATGACGCCGCTGCCG TTATCGAGGGGCCGTTGTTG m* EcoRV

m*EcoRV, indicates that an EcoRV site was engineered by site directed mutagenesis using the quickchange site directed muagenesis system (Stratagene) according to the manufacturer's directions. Pd indicates that a deletion was engineered by PCR. In the case of the egt locus this deletion removes the equivalent of nt 11622-12474 nt in the AcMNPV genome. For chiA the engineered deletion removes the chiA and cathepsin genes and is positioned nt 105461-107946 nt in the AcMNPV genome.