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. 2009 Oct 2;4(10):e7245. doi: 10.1371/journal.pone.0007245

Table 1. Statistics of X-ray diffraction data, phasing and structure refinement.

Data set Native Mercury derivative
Wavelength (Å) 1.095 1.095
Space group P21212 P21212
Cell dimensions (Å) a = 93.4, b = 99.7, c = 45.3 a = 93.0, b = 99.9, c = 45.2
Resolution (Å) 34.0–2.38 (2.47–2.38) 34.0–2.40 (2.49–2.40)
Unique reflections 17129 (1662) 15356 (1444)
Multiplicity 2.7 (2.6) 8.6 (8.5)
Completeness (%) 96.9 (97.0) 86.3 (83.4)
<I/σ(I)> 11.94 (2.2) 22.45 (3.91)
Rsym a (%) 3.8 (30.8) 5.6 (41.0)
Phasing statistics
Heavy atom sites 2 x Hg
Resolution (Å) 34–4.0 (34–3.0)
Figure of merit (acentric/centric) 0.36/0.28 (0.18/0.17)
bPhasing power (iso/ano) 0.99/1.27 (0.72/0.91)
c Rcullis (iso/ano) 0.82/0.75 (0.89/0.85)
Refinement statistics
Molecules (ASU) 2
No. of protein atoms 2267
No. of waters 90
Average B-factor (Å2) (protein/water) 53.6/53.4
Rwork d (%) 21.1
Rfree d (%) 25.4
Rms deviation
Bond length (Å) 0.006
Bond angle (°) 0.93
Coordinate error (maximum-likelihood based) 1.61
Ramachandran plot
Res. in most favored regions (%) 86.2
Res. in additional allowed regions (%) 13
Res. in generously allowed regions (%) 0.8

Numbers in parenthesis refer to the highest resolution shell (2.47–2.38 Å).

a

Rsym  =  ∑hkl(∑i[|Ihkl, i − <Ihkl>|]) / ∑hkl, i<Ihkl>, where Ihkl, I is the intensity of an individual measurement of the reflection with Miller indices h, k, and l, and <Ihkl> is the mean intensity of that reflection.

b

Phasing power  =  < phase-integrated lack of closure >/< FPHFP>, where FPH is the structure factor of the heavy atom derivative and FP is the structure factor of the native protein.

c

Rcullis  =  <[|FH, calc|/ phase-integrated lack of closure]>, where FH, calc is the calculated structure factor for the heavy atom.

d

Rwork  =  ∑hkl(||Fo, hkl| − |Fc, hkl||) / |Fo, hkl|, where |Fo, hkl| and |Fc, hkl| are the observed and calculated structure factor amplitudes. Rfree is defined and calculated in an equivalent manner, but based on a subset of 5% randomly selected reflections.