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. Author manuscript; available in PMC: 2010 Aug 1.
Published in final edited form as: Parallel Comput. 2009 Aug 1;35(8):429–440. doi: 10.1016/j.parco.2009.05.002

Table 1.

Description of the workloads used for testing.

Workload/Organism Reference size (bp) Minimum match Length (bp) Read type # of reads
HSILL H. sapiens 16,000,000 14 Illumina (29bp) 500,000
CBRIGG C. briggsae 13,000,000 100 Sanger (~700bp) 500,000
LMONO L. monocytogenes 2,944,528 20 454 (~120bp) 1,000,000
SSUIS S. suis 2,007,491 10 Illumina (36bp) 1,000,000