Table 2.
Rank∗ | Pi [%] | ΔGi [kcal/mol] | ΔEi [kcal/mol] | −TΔSi [kcal/mol] | Mi1 [ns] | α-Helix [%] | β-Sheet [%] |
---|---|---|---|---|---|---|---|
1 | 3.5 | −1.0 | −12.4 | 11.4 | 1 | 25 | 44 |
49 | 2.7 | −0.9 | −4.8 | 3.9 | 11 | 24 | 41 |
127 | 2.5 | −0.8 | −2.5 | 1.7 | 90 | 64 | 4 |
147 | 2.1 | −0.7 | 3.0 | −3.7 | 95 | 57 | 5 |
133 | 1.8 | −0.6 | 3.7 | −4.3 | 92 | 51 | 9 |
128 | 1.8 | −0.6 | 3.9 | −4.5 | 90 | 53 | 8 |
35 | 1.6 | −0.5 | −8.8 | 8.3 | 9 | 26 | 44 |
186 | 1.6 | −0.5 | 0.9 | −1.4 | 101 | 64 | 3 |
183 | 1.6 | −0.5 | 2.9 | −3.4 | 98 | 53 | 10 |
16 | 1.6 | −0.5 | −4.8 | 4.3 | 4 | 29 | 38 |
119 | 1.6 | −0.5 | −7.9 | 7.4 | 87 | 55 | 13 |
182 | 1.5 | −0.5 | 1.6 | −2.1 | 98 | 67 | 3 |
134 | 1.4 | −0.4 | 4.3 | −4.7 | 92 | 52 | 8 |
153 | 1.3 | −0.4 | −0.2 | −0.2 | 96 | 63 | 4 |
125 | 1.3 | −0.4 | 1.6 | −2.0 | 89 | 53 | 10 |
164 | 1.2 | −0.3 | −6.2 | 5.9 | 96 | 42 | 29 |
139 | 1.1 | −0.3 | 6.6 | −6.9 | 94 | 38 | 16 |
123 | 1.1 | −0.3 | 1.9 | −2.2 | 89 | 53 | 10 |
24 | 1.0 | −0.2 | 2.2 | −2.4 | 6 | 35 | 27 |
179 | 1.0 | −0.2 | 0.5 | −0.7 | 97 | 43 | 21 |
174 | 1.0 | −0.2 | 6.1 | −6.3 | 97 | 40 | 15 |
171 | 1.0 | −0.2 | 7.3 | −7.5 | 96 | 39 | 19 |
152 | 1.0 | −0.2 | 6.7 | −6.9 | 96 | 43 | 13 |
138 | 1.0 | −0.2 | 6.0 | −6.2 | 94 | 32 | 24 |
105 | 1.0 | −0.2 | 3.3 | −3.5 | 83 | 47 | 14 |
48 | 0.9 | −0.1 | −5.9 | 5.8 | 11 | 22 | 44 |
4 | 0.9 | −0.1 | −10.4 | 10.3 | 2 | 25 | 37 |
200 | 0.9 | −0.2 | −1.4 | 1.2 | 314 | 0 | 74 |
198 | 0.9 | −0.1 | −2.7 | 2.6 | 201 | 2 | 60 |
172 | 0.9 | −0.1 | 7.7 | −7.8 | 97 | 31 | 22 |
132 | 0.9 | −0.1 | 1.2 | −1.3 | 92 | 31 | 31 |
129 | 0.9 | −0.1 | 2.0 | −2.1 | 90 | 46 | 15 |
121 | 0.9 | −0.1 | 0.0 | −0.1 | 88 | 32 | 32 |
116 | 0.9 | −0.1 | 2.9 | −3.0 | 87 | 51 | 9 |
10 | 0.9 | −0.1 | −5.9 | 5.8 | 3 | 28 | 39 |
91 | 0.8 | −0.1 | 4.8 | −4.9 | 73 | 12 | 45 |
87 | 0.8 | −0.0 | 1.8 | −1.8 | 68 | 31 | 30 |
75 | 0.8 | −0.1 | 8.4 | −8.5 | 38 | 34 | 20 |
21 | 0.8 | −0.1 | 1.9 | −2.0 | 5 | 28 | 31 |
184 | 0.8 | −0.0 | 0.6 | −0.6 | 99 | 41 | 23 |
161 | 0.8 | −0.1 | −1.0 | 0.9 | 96 | 27 | 37 |
76 | 0.7 | −0.0 | 4.7 | −4.7 | 43 | 32 | 21 |
47 | 0.7 | 0.0 | −0.5 | 0.5 | 11 | 25 | 38 |
29 | 0.7 | 0.0 | −0.6 | 0.6 | 7 | 32 | 28 |
162 | 0.7 | 0.1 | −6.5 | 6.6 | 96 | 43 | 26 |
151 | 0.7 | 0.0 | 3.7 | −3.7 | 96 | 39 | 20 |
137 | 0.7 | 0.0 | 0.6 | −0.6 | 93 | 26 | 34 |
124 | 0.7 | 0.1 | −1.6 | 1.7 | 89 | 59 | 7 |
118 | 0.7 | 0.1 | 0.4 | −0.3 | 87 | 47 | 16 |
113 | 0.7 | 0.0 | 7.9 | −7.9 | 87 | 39 | 13 |
Average effective energy (sum of force field and SAS solvation energy) relative to the whole simulation ΔEi = 〈Ei〉 – 〈E〉, where the 〈Ei〉 and 〈E〉 values are calculated over the snapshots in the causally grouped mesostate i and the whole trajectory, respectively. Note that, in any force field, the absolute value of the effective energy is arbitrary and only ΔE values relative to a reference state are meaningful. The free energy differences are calculated by the relation . Consequently, the entropy contribution to the free energy difference, TΔSi, is calculated using the relation −TΔSi = ΔGi – ΔEi.
The rank reflects the folding time Mi1 calculated by the equilibrium evolutions of the Markov chain. Structures in mesostates with rank in boldface are shown in Figs. 3 and 4.