Figure 10.

Median ANOVA (1-p), Median Signed ANOVA (1-p), RMA, PLM ROC curves for all HG-U95A d = 1 conditions in the very low False Positive Rate region. This is a close up view of Figure 9 in the region of highest real-world interest. Since the ROC curves were obtained after pooling the results of the analyses of all 14 d = 1 conditions in the Latin Square design, there are 176750 false positives in total. Median ANOVA (1-p)'s, median signed ANOVA (1-p)'s and affylmGUI's RMA and Probe Level Modeling (PLM) are shown in red, black, green and cyan respectively.