Figure 7.

Median ANOVA (1-p), Median Signed ANOVA (1-p), RMA, PLM ROC curves for all HG-U133A d = 1 conditions. This chart shows the HG-U133A ROC curves for all comparisons in which experimental conditions increase by one (factor of 2) concentration step (plus those in the Latin square whose concentrations drop from 512 to 0 pM). ROC curves for each of the median of the probe level ANOVA (1-p)'s (red), the median of the probe level signed ANOVA (1-p)'s (black) and affylmGUI's RMA (green) and Probe Level Modeling (PLM) (cyan) were obtained after pooling the results of the analyses of all d = 1 conditions.