Table 4.
Nucleotide (upper right) and deduced amino acid (lower left) sequence similarities (%) of full-length CLA0749 in C. lari isolates and other thermophilic Campylobacterreference strains employed
| Campylobacter | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | C. lari JCM2530T | 99.9 | 100.0 | 99.7 | 89.4 | 90.0 | 90.0 | 89.4 | 89.4 | 85.5 | 90.0 | 85.5 | 85.5 | 85.4 | 85.5 | 85.5 | 100.0 | 61.7 | 61.6 | 61.8 | 62.5 | |
| 2 | C. lari 298 | 99.5 | 99.8 | 99.8 | 89.3 | 89.9 | 89.9 | 89.3 | 89.3 | 85.4 | 89.9 | 85.4 | 85.4 | 85.2 | 85.4 | 85.4 | 99.8 | 61.6 | 61.4 | 61.6 | 62.3 | |
| 3 | C. lari 300 | 100.0 | 99.5 | 99.7 | 89.4 | 90.0 | 90.0 | 89.4 | 89.4 | 85.5 | 90.0 | 85.5 | 85.5 | 85.4 | 85.5 | 85.5 | 100.0 | 61.7 | 61.6 | 61.8 | 62.5 | |
| 4 | C. lari 84C-1 | 99.5 | 100.0 | 99.5 | 89.1 | 89.7 | 89.7 | 89.1 | 89.4 | 85.2 | 89.7 | 85.2 | 85.2 | 85.1 | 85.2 | 85.2 | 99.7 | 62.2 | 62.1 | 61.6 | 62.3 | |
| 5 | UPTC 99 | 92.1 | 92.1 | 92.1 | 92.1 | 98.0 | 98.0 | 98.4 | 98.9 | 88.6 | 95.3 | 88.6 | 88.6 | 88.5 | 88.6 | 88.6 | 89.4 | 62.4 | 62.2 | 63.3 | 64.1 | |
| 6 | UPTC NCTC12892 | 93.0 | 93.0 | 93.0 | 93.0 | 99.1 | 100.0 | 97.7 | 97.8 | 89.4 | 95.1 | 89.1 | 89.1 | 89.2 | 89.4 | 89.4 | 90.0 | 61.8 | 61.6 | 63.1 | 64.1 | |
| 7 | UPTC NCTC12893 | 92.6 | 92.6 | 92.6 | 92.6 | 98.6 | 99.6 | 97.7 | 97.8 | 89.4 | 95.1 | 89.1 | 89.1 | 89.2 | 89.4 | 89.4 | 90.0 | 61.8 | 61.6 | 63.1 | 64.1 | |
| 8 | UPTC NCTC12894 | 92.5 | 92.5 | 92.5 | 92.5 | 98.1 | 99.1 | 98.6 | 98.9 | 88.2 | 95.0 | 88.2 | 88.2 | 88.0 | 88.2 | 88.2 | 89.4 | 61.6 | 61.4 | 62.8 | 63.4 | |
| 9 | UPTC NCTC12895 | 93.0 | 93.0 | 93.0 | 93.0 | 99.1 | 100.0 | 99.6 | 99.1 | 88.3 | 95.5 | 88.3 | 88.3 | 88.2 | 88.3 | 88.3 | 89.4 | 62.1 | 61.9 | 63.0 | 63.5 | |
| 10 | UPTC NCTC12896 | 87.4 | 87.4 | 87.4 | 87.4 | 90.2 | 90.2 | 89.8 | 89.7 | 90.2 | 87.7 | 99.1 | 99.1 | 99.8 | 100.0 | 99.8 | 85.5 | 63.4 | 62.9 | 63.2 | 64.4 | |
| 11 | UPTC CF89-12 | 92.5 | 92.5 | 92.5 | 92.5 | 96.7 | 97.7 | 97.2 | 97.2 | 97.7 | 88.8 | 87.7 | 87.7 | 87.5 | 87.7 | 87.7 | 90.0 | 63.0 | 63.7 | 63.8 | 64.0 | |
| 12 | UPTC A1 | 87.9 | 87.9 | 87.9 | 87.9 | 90.7 | 90.7 | 90.2 | 90.2 | 90.7 | 98.6 | 89.3 | 100.0 | 98.9 | 99.1 | 98.9 | 85.5 | 63.5 | 63.1 | 63.2 | 64.6 | |
| 13 | UPTC A2 | 87.9 | 87.9 | 87.9 | 87.9 | 90.7 | 90.7 | 90.2 | 90.2 | 90.7 | 98.6 | 89.3 | 100.0 | 98.9 | 99.1 | 98.9 | 85.5 | 63.5 | 63.1 | 63.2 | 64.6 | |
| 14 | UPTC A3 | 86.9 | 86.9 | 86.9 | 86.9 | 89.7 | 89.7 | 89.3 | 89.2 | 89.7 | 99.5 | 88.3 | 98.1 | 98.1 | 99.8 | 99.7 | 85.4 | 63.2 | 62.8 | 63.0 | 64.3 | |
| 15 | UPTC 89049 | 87.4 | 87.4 | 87.4 | 87.4 | 90.2 | 90.2 | 89.8 | 89.7 | 90.2 | 100.0 | 88.8 | 98.6 | 98.6 | 99.5 | 99.8 | 85.5 | 63.4 | 62.9 | 63.2 | 64.4 | |
| 16 | UPTC 92251 | 87.4 | 87.4 | 87.4 | 87.4 | 90.2 | 90.2 | 89.8 | 89.7 | 90.2 | 99.5 | 88.8 | 98.1 | 98.1 | 99.1 | 99.5 | 85.5 | 63.2 | 62.8 | 63.4 | 64.3 | |
| 17 | C. lari RM2100 | 100.0 | 99.5 | 100.0 | 99.5 | 92.1 | 93.0 | 92.6 | 92.5 | 93.0 | 87.4 | 92.5 | 87.9 | 87.9 | 86.9 | 87.4 | 87.4 | 61.7 | 61.6 | 61.8 | 62.5 | |
| 18 | C. jejuni NCTC11168 | 51.2 | 51.2 | 51.2 | 51.2 | 52.1 | 52.1 | 51.9 | 51.6 | 52.1 | 52.1 | 52.1 | 52.1 | 52.1 | 51.6 | 52.1 | 52.1 | 51.2 | 99.1 | 81.6 | 63.3 | |
| 19 | C. jejuni RM1221 | 50.7 | 50.7 | 50.7 | 50.7 | 51.6 | 51.6 | 51.4 | 51.2 | 51.6 | 51.6 | 51.6 | 51.6 | 51.6 | 51.2 | 51.6 | 51.6 | 50.7 | 98.6 | 81.4 | 63.6 | |
| 20 | C. coli RM2228 | 52.6 | 52.6 | 52.6 | 52.6 | 54.0 | 54.0 | 53.7 | 53.5 | 54.0 | 52.6 | 54.0 | 52.1 | 52.1 | 52.1 | 52.6 | 52.6 | 52.6 | 81.2 | 80.8 | 63.8 | |
| 21 | C. upsaliensis RM3195 | 54.2 | 54.2 | 54.2 | 54.2 | 55.6 | 55.6 | 55.6 | 56.2 | 55.6 | 55.3 | 55.1 | 55.3 | 55.3 | 54.0 | 55.3 | 55.3 | 54.2 | 55.6 | 55.6 | 56.9 |