Table 1.
Transcripts regulated in vitellogenic ovary relative to previtellogenic ovary
| Clone ID | GenBank accession | FCa | UniProtKB/TrEMBL entry | Swiss-Prot hit |
BLAST E-value |
Length (% identity)b | Gene Symbol |
| pgsP0015N21 | FF286629 | +5.13 | Q3ZLC7 | Selenoprotein W2a [Oreochromis mossambicus] | 4E-04 | 27 (70%) | sepw2a |
| pgsP0003P21 | FF282633 | +4.64 | JC1348 | Hypothetical 18 K protein, mitochondrion [Carassius auratus] | 2E-06 | 40 (70%) | |
| pgsP0005D08 | FF283023 | +4.49 | Unknown | ||||
| pgsP0017G22 | FF287169 | +3.94 | Q0KJ14 | Cytochrome c oxidase subunit I [Solea senegalensis] | 3E-84 | 230 (92%) | cox1 |
| pgsP0029L14 | FF291468 | +3.67 | Q7ZUR6 | Muscle-specific beta 1 integrin binding protein 2 [Danio rerio] | 2E-83 | 192 (78%) | mibp2 |
| pgsP0018D11 | FF287436 | +3.56 | Q75v54 | Cytochrome b [S. senegalensis] | 8E-74 | 165 (93%) | cytb |
| pgsP0019B22 | FF287743 | +3.34 | A8R7E8 | Cytosolic heat shock protein 90 beta [S. senegalensis] | 6E-70 | 133 (100%) | hsp90b |
| pgsP0008A11 | FF283945 | +3.21 | Q0KJ09 | NADH dehydrogenase subunit 3 [S. senegalensis] | 1E-43 | 111 (84%) | nd3 |
| pgsP0003A24 | FF282359 | +3.00 | B1B560 | Beta actin isoform 1 [S. senegalensis] | 4E-22 | 51 (100%) | bactin1 |
| pgsP0020D03 | FF288118 | +2.93 | P79893 | Chorion protein (zona protein 3) [Sparus aurata] | 8E-69 | 160 (70%) | zp3 |
| pgsP0021P08 | FF288738 | +2.69 | Q0KJ16 | NADH dehydrogenase subunit 1 [S. senegalensis] | 2E-124 | 280 (88%) | nd1 |
| pgsP0013B15 | FF285673 | +2.62 | Q7SZR1 | Transducer of ERBB2, 1a [Danio rerio] | 1E-57 | 175 (77%) | tob1a |
| pgsP0007G02 | FF283724 | +2.59 | Q6IQR3 | Alpha actin [D. rerio] | 7E-123 | 282 (83%) | actc1l |
| pgsP0025N01 | FF290105 | +2.47 | Q805D1 | Tropomyosin1-1 [Takifugu rubripes] | 1E-19 | 55 (90%) | tpm1-1 |
| pgsP0029A20 | FF291229 | +2.41 | Q0P4B4 | Transgelin [D. rerio] | 4E-60 | 141 (79%) | tagln |
| pgsP0028P05 | FF291191 | +2.29 | Q6PFN7 | Protein arginine methyltransferase 1 [D. rerio] | 1E-167 | 308 (95%) | prmt1 |
| pgsP0015D24 | FF286403 | +2.12 | Unknown | ||||
| pgsP0020O05 | FF288363 | +2.11 | Unknown | ||||
| pgsP0014A08 | FF285984 | +2.09 | Unknown | ||||
| pgsP0029C16 | FF291271 | +1.99 | A1XQX0 | Neurexin 1a [D. rerio] | 3E-132 | 266 (84%) | nrxn1a |
| pgsP0015H15 | FF286488 | +1.98 | Unknown | ||||
| pgsP0030I24 | FF291759 | +1.96 | Unknown | ||||
| pgsP0029L19 | FF291472 | +1.92 | Q8JGW0 | Thrombospondin 4b [D. rerio] | 1E-100 | 175 (97%) | thbs4b |
| pgsP0004D01 | FF282692 | +1.93 | Q5ZMG8 | Ras homolog member G (rho G) [Gallus gallus] | 2E-90 | 162 (93%) | rhog |
| pgsP0017K07 | FF287242 | +1.90 | Q6NWF6 | Keratin, type II cytoskeletal 8 [D. rerio] | 4E-33 | 79 (94%) | krt8 |
| pgsP0028F14 | FF290985 | +1.89 | Q9UMS5 | Putative homeodomain transcription factor 1 [Homo sapiens] | 4E-56 | 144 (70%) | phtf1 |
| pgsP0016G07 | FF286813 | +1.88 | Unknown | ||||
| pgsP0009A17 | FF284280 | +1.87 | Q2YDR3 | Inositol monophosphatase 3 [D. rerio] | 6E-13 | 74 (84%) | impa3 |
| pgsP0027D14 | FF290593 | +1.85 | Q8AY63 | Creatine kinase, brain [D. rerio] | 7E-84 | 179 (90%) | ckb |
| pgsP0020F22 | FF288178 | +1.82 | Q4U0S2 | Smooth muscle myosin heavy chain [D. rerio] | 1E-97 | 180 (87%) | myh11 |
| pgsP0027C08 | FF290565 | +1.80 | Q3T0R7 | 3-Ketoacyl-CoA thiolase, mitochondrial [Bos taurus] | 1E-30 | 76 (82%) | acaa2 |
| pgsP0028D08 | FF290934 | +1.76 | Unknown | ||||
| pgsP0008G08 | FF284066 | +1.74 | Unknown | ||||
| pgsP0001G21 | FF281897 | +1.74 | A3KQ53 | Novel protein similar to vertebrate serum/glucocorticoid regulated kinase (SGK) [D. rerio] | 2E-45 | 90 (81%) | sgk |
| pgsP0013L08 | FF285880 | -5.32 | Q1L8U4 | Novel protein similar to vertebrate CDC-like kinase 2 (CLK2) [D. rerio] | 4E-91 | 184 (87%) | si:ch211-81a5.7 |
| pgsP0028D18 | FF290943 | -4.80 | Q6PHK4 | Alanine-glyoxylate aminotransferase [D. rerio] | 2E-64 | 150 (76%) | agxt |
| pgsP0020C06 | FF288101 | -3.58 | Unknown | ||||
| pgsP0028H11 | FF291026 | -3.17 | Q7T376 | Novel protein similar to vertebrate CD53 molecule [D. rerio] | 8E-24 | 92 (55%) | zgc:64051 |
| pgsP0027F18 | FF290638 | -2.23 | Unknown | ||||
| pgsP0028J05 | FF291062 | -2.22 | Q8HXG6 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 [B. taurus] | 2E-23 | 133 (44%) | ndufa11 |
| pgsP0008I12 | FF284114 | -2.12 | Q6NY77 | Dihydrodipicolinate synthase-like, mitochondrial [D. rerio] | 2E-66 | 172 (77%) | zgc:77082 |
| pgsP0007P01 | FF283914 | -2.12 | Q7TQ08 | Scinderin [Rattus norvegicus] | 3E-79 | 193 (70%) | scin |
| pgsP0009H07 | FF284426 | -2.10 | Q2TAT1 | Hypothetical protein LOC735233 [Xenopus laevis] | 1E-24 | 166 (43%) | MGC130935 |
| pgsP0016E15 | FF286777 | -2.06 | Q8UW64 | Proteasome subunit beta type-9 [Oryzias latipes] | 3E-41 | 98 (84%) | psmb9a |
| pgsP0004A14 | FF282647 | -2.01 | Q5JBI1 | Carboxypeptidase H [Paralichthys olivaceus] | 4E-58 | 133 (94%) | cph |
| pgsP0012M12 | FF285564 | -1.89 | Q6ZM96 | Coiled-coil domain containing 90B [D. rerio] | 1E-22 | 107 (61%) | ccdc90b |
aFold change; b Extent of BLASTX hit aligned region (in amino acids), and percent identity over the aligned region.