Table 1.
Genes Identified from the Microarray Experiment That Are Differentially Expressed Both between the Wild-Type and pft1 Genotypes and Also after F. oxysporum Treatment (Two-Way ANOVA, P < 0.05 Adjusted by the False Discovery Rate)
| AGI Locus | P Value | Infected/Mock | pft1/Wild Type | AGI Description | Jasmonate Inducibility |
|---|---|---|---|---|---|
| AT1G19640 | 0.0006 | 2.5266 | 0.6016 | Jasmonic acid carboxyl methyltransferase (JMT) | 10.46 |
| AT4G24340 | 0.0009 | 2.6703 | 0.2733 | Phosphorylase family protein | 11.45 |
| AT4G24350 | 0.0009 | 2.2642 | 0.3178 | Phosphorylase family protein | 11.45 |
| AT3G05730 | 0.0023 | 2.1376 | 0.5933 | Defensin-like protein | 0.92 |
| AT1G70700 | 0.0031 | 1.8562 | 0.5318 | Jasmonate Zim-domain protein 9 (JAZ9) | 28.95 |
| AT1G66100 | 0.0036 | 1.8243 | 0.3275 | Thionin, identical to thionin 2.4 precursor | 14.09 |
| AT3G04720 | 0.0043 | 4.4631 | 0.0841 | Hevein-like protein (HEL) | 1.15 |
| AT5G24420 | 0.0068 | 2.1219 | 0.6044 | Glucosamine/galactosamine-6-phosphate isomerase-related | 33.24 |
| AT1G06830 | 0.0134 | 1.5713 | 0.7332 | Monothiol glutaredoxin-S11 (GRXS11) | 0.67 |
| AT1G11580 | 0.0160 | 1.8307 | 0.6279 | Pectin methylesterase (ATPMECRA) | 1.87 |
| AT5G61160 | 0.0198 | 6.5067 | 0.1410 | Anthocyanin 5-aromatic acyltransferase 1 (AACT1) | 2.62 |
| AT5G44420 | 0.0198 | 32.7145 | 0.0125 | Plant defensin 1.2a (PDF1.2a) | 1.05 |
| AT3G16530 | 0.0198 | 3.7444 | 0.2426 | Legume lectin family protein | 1.03 |
| AT1G19670 | 0.0209 | 2.7618 | 0.3069 | Chlorophyllase 1 (ATCHL1)/coronatine-induced protein 1 | 30.83 |
| AT5G23820 | 0.0209 | 1.3360 | 0.6500 | MD-2–related lipid recognition domain-containing protein | 2.09 |
| AT1G69370 | 0.0210 | 1.4756 | 0.7482 | Chorismate mutase3 (CM3) | 3.59 |
| AT3G62410 | 0.0256 | 1.1571 | 0.8770 | CP12 domain-containing protein (CP12-2) | 0.61 |
| AT5G40610 | 0.0326 | 1.3079 | 0.7687 | Glycerol-3-phosphate dehydrogenase | 1.00 |
| AT4G13410 | 0.0366 | 1.7372 | 0.6285 | Cellulose synthase like protein (ATCSLA15) | 18.97 |
| AT2G03980 | 0.0366 | 1.2918 | 0.6883 | GDSL-motif lipase/hydrolase family protein | 4.24 |
| AT5G02940 | 0.0397 | 1.4524 | 0.7374 | Phosphotransferase-related protein | 4.60 |
| AT4G01450 | 0.0443 | 0.7104 | 0.7634 | Nodulin MtN21 family protein similar to MtN21 | 1.31 |
Values listed under the Infected/Mock and pft1/Wild Type columns are the normalized ratios obtained from the entire microarray data set. Analysis of publicly available microarray data revealed an enrichment of JA-induced genes within the list. Values listed under the Jasmonate Inducibility column indicate the expression ratio after MeJA treatment according to Genevestigator (Zimmermann et al., 2004) (values in bold represent genes >1.5-fold induced). AGI, Arabidopsis Genome Initiative.