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. 2009 Aug;21(8):2203–2219. doi: 10.1105/tpc.109.068411

Table 4.

The Number of Statistically Significant Differentially Expressed r-Protein Genes among Pairs of Compared Tissues in B. napus (P < 0.05)

Ribosomal Protein Gene U D Ribosomal Protein Gene U D Ribosomal Protein Gene U D
Male (Pollen and Anthers) versus Female Early Embryos versus Embryos and Zygotic Embryos (Early Embryos, Embryos, and
(Ovules) NG = 443, ND = 206 Seeds NG = 619, ND = 200 Seeds) versus Microspore NG = 638, ND = 162
    S2 Contig295 X     S10 Contig150 X     S3 Contig407 X
    S2 Contig588 X     S10 Contig229 X     S3 Contig440 X
    S2 Contig611 X     S10 Contig721 X     S4 Contig273 X
    S18 Contig451 X     S12 Contig235 X     S4 Contig627 X
    S18 Contig769 X     S12 Contig395 X     S13 Contig247 X
    S18 Contig914 X     S21 Contig272 X     S13 Contig279 X
    L8 Contig289 X     S21 Contig35 X     S13 Contig633 X
    L8 Contig434 X     S21 Contig412 X     S20 Contig206 X
    L8 Contig73 X     S21 Contig706 X     S20 Contig207 X
    S25 Contig570 X     S20 Contig263 X
    S25 Contig720 X     S21 Contig266 X
Microspores versus Ovules     S27 Contig288 X     S21 Contig272 X
NG = 480, ND = 165     S27 Contig714 X     S21 Contig35 X
    S3a Contig33 X     S27 Contig88 X     S21 Contig630 X
    S3a Contig836 X     P1 Contig321 X     S21 Contig646 X
    S3a Contig117 X     P1 Contig427 X     S21 Contig74 X
    S9 Contig348 X     P1 Contig712 X     S26 Contig428 X
    S9 Contig482 X     P1 Contig82 X     S26 Contig490 X
    S9 Contig749 X     L6 Contig1 X     S26 Contig572 X
    S9 Contig78 X     L6 Contig462 X     S29 Contig632 X
    S11 Contig36 X     L6 Contig555 X     S29 Contig702 X
    S11 Contig504 X     L6 Contig717 X     L4 Contig503 X
    S11 Contig550 X     L27 Contig162 X     L4 Contig89 X
    S11 Contig640 X     L27 Contig231 X     L12 Contig2 X
    S12 Contig235 X     L27 Contig460 X     L12 Contig309 X
    S12 Contig389 X     L27 Contig52 X     L12 Contig639 X
    S12 Contig473 X     L22 Contig102 X
    S12 Contig475 X     L22 Contig419 X
    S12 Contig517 X Endosperm versus Seed Coat     L22 Contig47 X
    S27 Contig284 X NG = 503, ND = 94     L22 Contig635 X
    S27 Contig88 X     S5 Contig101 X     L23 Contig441 X
    P1 Contig321 X     S5 Contig463 X     L23 Contig453 X
    P1 Contig581 X     L18a Contig361 X     L23 Contig483 X
    L6 Contig1 X     L18a Contig442 X     L23 Contig648 X
    L6 Contig336 X     L18a Contig549 X     L29 Contig234 X
    L6 Contig535 X     L40 Contig299 X     L29 Contig656 X
    L17 Contig107 X     L40 Contig342 X     L29 Contig84 X
    L17 Contig220 X     L30 Contig136 X
    L17 Contig560 X     L30 Contig654 X
    L17 Contig623 X Meristem (Apical Meristem and     L35a Contig368 X
    L17 Contig771 X Bud) versus Leaves NG = 237, ND = 26     L35a Contig628 X
    L30 Contig791 X     L18a Contig1068 X     L35a Contig629 X
    L30 Contig91 X     L18a Contig549 X     L35a Contig631 X
    L37a Contig282 X
MDEs versus Pollen-In     L37a Contig650 X
Vitro NG = 391, ND = 2 Roots versus Stems NG = 162, ND = 23     L38 Contig124 X
    None     None     L38 Contig316 X
    L38 Contig344 X
    L38 Contig590 X
    L38 Contig613 X
    L38 Contig641 X
    L39 Contig596 X
    L39 Contig626 X
    L40 Contig299 X
    L40 Contig342 X
    L40 Contig547 X

Paralogs encoding the same ribosomal protein that have statistically significant opposite expression patterns among the compared tissues are shown (i.e., cases where all paralogs for a single r-protein are similarly up- or downregulated in one of the compared tissues are not shown). NG, number of compared genes (that have at least one EST among the two compared tissues); ND, total number of differentially expressed genes; U, upregulated; D, downregulated. Upregulation and downregulation of each gene is for the first tissue listed relative to the second tissue in each paired comparison.