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Length distributions of small and medium insertions and deletions under sequencing reads with respective concordances. Deletions are detected up to 500 bp and insertions up to 20 bp. A high prevalence of small indels, even-sized indels, and Alu-sized deletions (300–350 bp) are found in this genome. Larger indels (deletions 12 bp and higher and insertions 4 bp and higher) are called with more restrictive settings (see Methods) than smaller ones.
