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. Author manuscript; available in PMC: 2010 Aug 1.
Published in final edited form as: J Comput Chem. 2009 Aug;30(11):1701–1711. doi: 10.1002/jcc.21268

Figure 7.

Figure 7

The running average of absolute binding free energies of ligand B and E from MM-PMPB/SA. A total of 80 snapshots were extracted at a 2.5 ps interval from the last 200 ps of the explicit water simulation trajectory.