Table III.
Local structure prediction per transition category.
| Analysis of the structural prediction results per transition categories | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | ||
| SVM_PSSM |
Proportion of true positives |
45.64 | 29.46 | 33.24 | 23.48 | 45.62 | 42.42 | 39.96 | 37.11 | 41.09 | 27.72 |
| Prediction rate (approximation <2.5Å) | 64.22 | 64.22 | 62.97 | 36.87 | 60.88 | 55.95 | 59.95 | 71.71 | 72.71 | 57.57 | |
| Prediction rate gains over random (approximation <2.5Å) | 41.83 | 33.85 | 38.50 | 25.53 | 42.82 | 38.22 | 40.60 | 38.71 | 37.73 | 31.76 | |
| Prediction rate gains over Similar Sequences Search (approximation <2.5Å) | 20.81 | 29.13 | 24.73 | 12.33 | 15.24 | 15.83 | 18.95 | 14.61 | 8.79 | 13.37 | |
| Prediction rate gains over LR_seq (approximation <2.5Å) | 6.42 | 15.98 | 5.95 | 4.22 | 4.92 | 6.49 | 6.48 | 10.97 | 8.83 | 6.02 | |