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. 2009 Jul 9;10:210. doi: 10.1186/1471-2105-10-210

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Copyright © 2009 Kim et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Change in accuracy of each individual alignment after refinement. The alignments from each method were sorted according to their Δf_CAR(0), which is the f_CAR(0) of the refined alignment minus that of the original alignment. The nine graphs, one for each method, are arranged in alphabetical order. The x- and y- axes in each graph represent the alignment and Δf_CAR(0), respectively. The number of alignments for which f_CAR(0) increased and decreased are, respectively, (1495, 469), (733, 770), (2130, 437), (2029, 383), (835, 867), (1542, 581), (1669, 182), (1221, 182), and (2054, 334), for CE, DaliLite, FAST, LOCK2, MATRAS, MATT, SHEBA, TM-align, and VAST, respectively.