Skip to main content
. 2009 Sep 2;9:20. doi: 10.1186/1472-6785-9-20

Table 2.

Locus, SNP, major allele frequency (m.a.f), observed heterozygosity (Ho), expected heterozygosity (He), Fst values and deviations from Hardy-Weinberg equilibrium (p-value) for each genotyped SNP.

locus SNP m.a.f. Ho He FST p-value
Activin receptor IIB ACVR2B 0.803 0.308 0.294 0.076 0.815
Calpastatin CAST 0.948 0.096 0.087 0.124 0.742
K-casein CSN3 0.761 0.314 0.348 0.046 0.660
CathepsinK CTSK 0.945 0.098 0.102 0.029 0.997
Desmin DES 0.602 0.452 0.457 0.051 0.999
MHC class II DQA gene HLA-DQA_1 0.884 0.116 0.191 0.077 0.000*
MHC class II DQA gene HLA-DQA_2 0.672 0.158 0.400 0.102 0.000*
MHC class II DRB gene HLA-DRB 0.838 0.226 0.258 0.057 0.077
Fatty acid-binding protein 4 FABP4 0.992 0.012 0.016 0.009 0.096
Fibronectin FN1 0.811 0.238 0.292 0.050 0.309
Growth differentiation factor 9B GDF9 0.808 0.215 0.298 0.043 0.004*
Growth hormone receptor GHR 0.514 0.463 0.495 0.011 0.794
Interleukin-4 IL4 0.508 0.440 0.432 0.144 0.932
Interleukin-2 IL2_1 0.983 0.033 0.032 0.008 1.000
Interleukin-2 IL2_2 0.839 0.243 0.246 0.096 0.964
Integrin B1 ITGB1 0.637 0.422 0.452 0.025 0.947
Beta-lactoglobulin LGB 0.757 0.338 0.341 0.078 0.998
Melatonin MTNR1A 0.558 0.453 0.451 0.093 0.865
Myostatin GDF8 0.942 0.098 0.106 0.031 0.940
Prion protein PRNP_1 0.624 0.422 0.439 0.070 0.965
Prion protein PRNP_2 0.649 0.408 0.431 0.058 0.641
Toll-like receptor 4 TLR4 0.571 0.441 0.475 0.033 0.231
microsatellite U80 0.838 0.254 0.262 0.037 0.996
Mean 0.706 0.272 0.300 0.059

*: Highly significant