Table 2.

Locus, SNP, major allele frequency (m.a.f), observed heterozygosity (Ho), expected heterozygosity (He), Fst values and deviations from Hardy-Weinberg equilibrium (p-value) for each genotyped SNP.

locus	SNP	m.a.f.	Ho	He	FST	p-value
Activin receptor IIB	ACVR2B	0.803	0.308	0.294	0.076	0.815
Calpastatin	CAST	0.948	0.096	0.087	0.124	0.742
K-casein	CSN3	0.761	0.314	0.348	0.046	0.660
CathepsinK	CTSK	0.945	0.098	0.102	0.029	0.997
Desmin	DES	0.602	0.452	0.457	0.051	0.999
MHC class II DQA gene	HLA-DQA_1	0.884	0.116	0.191	0.077	0.000*
MHC class II DQA gene	HLA-DQA_2	0.672	0.158	0.400	0.102	0.000*
MHC class II DRB gene	HLA-DRB	0.838	0.226	0.258	0.057	0.077
Fatty acid-binding protein 4	FABP4	0.992	0.012	0.016	0.009	0.096
Fibronectin	FN1	0.811	0.238	0.292	0.050	0.309
Growth differentiation factor 9B	GDF9	0.808	0.215	0.298	0.043	0.004*
Growth hormone receptor	GHR	0.514	0.463	0.495	0.011	0.794
Interleukin-4	IL4	0.508	0.440	0.432	0.144	0.932
Interleukin-2	IL2_1	0.983	0.033	0.032	0.008	1.000
Interleukin-2	IL2_2	0.839	0.243	0.246	0.096	0.964
Integrin B1	ITGB1	0.637	0.422	0.452	0.025	0.947
Beta-lactoglobulin	LGB	0.757	0.338	0.341	0.078	0.998
Melatonin	MTNR1A	0.558	0.453	0.451	0.093	0.865
Myostatin	GDF8	0.942	0.098	0.106	0.031	0.940
Prion protein	PRNP_1	0.624	0.422	0.439	0.070	0.965
Prion protein	PRNP_2	0.649	0.408	0.431	0.058	0.641
Toll-like receptor 4	TLR4	0.571	0.441	0.475	0.033	0.231
microsatellite	U80	0.838	0.254	0.262	0.037	0.996
	Mean	0.706	0.272	0.300	0.059

*: Highly significant