Table I.
Sequenced BACs across the rf1 locus
| BAC (ZMMBB) | Length | Sequence Deptha | BAC Percentage Repetitive | BAC Percentage Genic | Post-Finish Gaps | Computationally Closed Gaps | Gaps Remaining | Reasons for Gaps |
|---|---|---|---|---|---|---|---|---|
| rf1-C1 | ||||||||
| b0322P15 | 158,174 | 9.17 | 80.23 | 0.00 | 2 | 2 | 0 | |
| b0452F11 | 127,944 | 12.90 | 84.47 | 0.00 | 0 | 0 | 0 | |
| b0153H24 | 132,164 | 9.38 | 74.09 | 0.00 | 1 | 1 | 0 | |
| c0080G23 | 167,218 | 8.90 | 66.66 | 5.37 | 0 | 0 | 0 | |
| b0211C05 | 142,755 | 9.54 | 74.97 | 4.05 | 0 | 0 | 0 | |
| b0331I02 | 149,683 | 11.48 | 85.60 | 0.00 | 2 | 1 | 1 | Dinucleotide gapb |
| c0360P05 | 178,651 | 8.16 | 82.62 | 1.75 | 1 | 1 | 0 | |
| b0348F20 | 129,989 | 11.86 | 75.49 | 0.00 | 1 | 2 | 0 | |
| rf1-C2 | ||||||||
| b0345O22 | 112,741 | 10.52 | 93.01 | 0.00 | 3 | 3 | 0 | |
| c0294D02 | 171,602 | 7.38 | 78.56 | 4.43 | 2 | 0 | 0 | |
| b0103L15 | 154,263 | 8.41 | 85.58 | 0.00 | 1 | 1 | 0 | |
| b0622H01 | 156,570 | 10.39 | 80.46 | 1.24 | 0 | 0 | 0 | |
| b0335C07 | 132,421 | 12.36 | 84.13 | 0.78 | 0 | 0 | 0 |
a
To not count sequences from overlapping BACs twice, information presented here is calculated from the start of a BAC sequence to the start of the next overlapping BAC sequence.
b
Four areas of small nucleotide repeats causing the gap: GA × 300 bp, unresolved sequence gap, GA × 400 bp, TTAGGG × 620 bp, AT × 50 bp.