Table II.
TEs identified with TEnest by repeat cluster
| Repeat Cluster | Start | End | Size | TE Insertions | LTR Retrotransposon | Solo LTR | DNA Transposon | MITE | Partial |
|---|---|---|---|---|---|---|---|---|---|
| rf1-C1 | |||||||||
| RC1 | 1 | 31,288 | 31,287 | 3 | 3 | ||||
| RC2 | 34,881 | 82,158 | 47,277 | 4 | 4 | ||||
| RC3 | 101,703 | 191,706 | 90,003 | 14 | 7 | 3 | 4 | ||
| RC4 | 289,569 | 341,973 | 52,404 | 6 | 4 | 1 | 1 | ||
| RC5 | 366,102 | 389,224 | 23,122 | 5 | 2 | 1 | 2 | ||
| RC6 | 407,934 | 509,832 | 101,898 | 13 | 11 | 2 | |||
| RC7 | 536,833 | 573,823 | 36,990 | 6 | 3 | 1 | 2 | ||
| RC8 | 615,187 | 691,808 | 76,621 | 9 | 6 | 1 | 2 | ||
| RC9 | 699,169 | 792,216 | 93,047 | 12 | 7 | 5 | |||
| RC10 | 876,233 | 918,911 | 42,678 | 4 | 4 | ||||
| RC11 | 924,464 | 960,629 | 36,165 | 8 | 2 | 1 | 5 | ||
| rf1-C2 | |||||||||
| RC12 | 1 | 120,813 | 120,812 | 14 | 10 | 2 | 2 | ||
| RC13 | 147,102 | 302,699 | 155,597 | 18 | 12 | 2 | 2 | 2 | |
| RC14 | 313,302 | 367,983 | 54,681 | 8 | 4 | 1 | 3 | ||
| RC15 | 401,526 | 456,413 | 54,887 | 6 | 4 | 2 | |||
| RC16 | 515,062 | 593,635 | 78,573 | 12 | 6 | 1 | 5 |