Table III.
Selected genes regulated in pnp1-1 relative to the wild type independent of P status
| Probe Set Identifier | Arabidopsis Genome Initiative Code | Description |
pnp1-1 versus the Wild Type
|
|
|---|---|---|---|---|
| Fold Change on +P | Fold Change on −P | |||
| Photosynthesis- and chloroplast-targeted proteins | ||||
| 244977_at | AtCg00730 | PetD | 102.82 | 151.68 |
| 245002_at | AtCg00270 | PsbD | 28.93 | 34.44 |
| 245015_at | AtCg00490 | RbcL | 16.12 | 18.88 |
| 244970_at | AtCg00660 | Rpl20 | 15.03 | 26.41 |
| 245005_at | AtCg00330 | Rps14 | 10.57 | 43.80 |
| 244991_s_at | AtCg00890 | Ndh.B1 | 9.54 | 18.21 |
| 245003_at | AtCg00280 | PsbC | 6.35 | 9.79 |
| 244966_at | AtCg00600 | PetG | 5.57 | 7.03 |
| 245004_at | AtCg00300 | Ycf9 (PsbZ) | 3.24 | 4.99 |
| 245000_at | AtCg00210 | Ycf6 (PetN) | 2.79 | 3.08 |
| 244969_at | AtCg00650 | Rps18 | 2.14 | 2.76 |
| 244988_s_at | AtCg00840 | Rpl23.1 | 0.50 | 0.49 |
| 244964_at | AtCg00580 | PsbE | 0.40 | 0.47 |
| 245024_at | AtCg00120 | AtpA | 0.17 | 0.35 |
| 264868_at | At1g24090 | RNase H domain-containing protein | 7.19 | 5.56 |
| 256459_at | At1g36180 | Acetyl-CoA carboxylase 2 (ACC2) | 6.86 | 13.60 |
| 260648_at | At1g08050 | Zinc finger (C3HC4-type RING finger) family protein | 4.12 | 3.23 |
| 257667_at | At3g20440 | BE1/EMB2729 (branching enzyme 1), α-amylase | 3.58 | 4.98 |
| 245523_at | At4g15910 | Drought-induced protein (Di21) | 3.10 | 2.75 |
| 265479_at | At2g15760 | Calmodulin-binding protein, similar to AR781 | 2.59 | 3.26 |
| 263325_at | At2g04240 | Zinc finger (C3HC4-type RING finger) family protein | 0.47 | 0.47 |
| 248040_at | at5g55970 | Zinc finger (C3HC4-type RING finger) family protein | 0.26 | 0.25 |
| PYK10-associated proteins | ||||
| 265051_at | At1g52100 | JAL11, jacalin-lectin family protein | 26.05 | 17.67 |
| 259384_at | At3g16450 | JAL33, jacalin-lectin family protein, similar to ATMLP-300B (myrosinase-binding protein-like protein 300B) | 13.28 | 4.97 |
| 266988_at | At2g39310 | JAL22, jacalin-lectin family protein | 8.73 | 3.46 |
| 259327_at | At3g16460 | JAL34, jacalin-lectin family protein, similar to MBP1 (myrosinase-binding protein 1) | 7.87 | 4.32 |
| 259381_s_at | At3g16390 | JAL27, jacalin-lectin family protein, similar to ATMLP-470 | 5.25 | 2.71 |
| 262001_at | At1g33790 | JAL4, jacalin-lectin family protein | 3.28 | 4.63 |
| 259382_s_at | At3g16430 At3g16420 | JAL30, PBP1 (PYK10-binding protein 1) JAL31 | 5.60 | 3.10 |
| 263153_s_at | At1g54000 At1g54010 | GLL22, myrosinase-associated protein GLL23, myrosinase-associated protein | 18.11 | 6.18 |
| 263156_at | At1g54030 | GLL25, GDSL-motif lipase similar to ESM1 (epithiospecifier modifier 1) | 3.57 | 2.19 |
| 259009_at | At3g09260 | PYK10 (phosphate starvation response 3.1) | 10.95 | 4.27 |
| 257798_at | At3g15950 | TSA1-like (DNA topoisomerase), similar to TSK-associating protein 1 (TSA1) | 12.46 | 5.78 |
| 249817_at | At5g23820 | MD-2-related lipid recognition domain-containing protein | 3.65 | 3.68 |
| 246855_at | At5g26280 | Meprin and TRAF homology domain-containing protein | 12.51 | 7.61 |
| RNA- and DNA-related proteins | ||||
| 264460_at | At1g10170 | NF-X1-type zinc finger family protein | 4.56 | 3.03 |
| 267140_at | At2g38250 | DNA-binding protein-related, similar to transcription factor | 3.17 | 2.55 |
| 260266_at | At1g68520 | Zinc finger (B-box-type) family protein | 0.40 | 0.46 |
| 262291_at | At1g70790 | C2 domain-containing protein | 0.38 | 0.35 |
| 248764_at | At5g47640 | CCAAT box-binding transcription factor subunit B (NF-YB) (HAP3) | 0.26 | 0.32 |
| 252504_at | At3g46590 | TRFL1 (TRF-LIKE 1) telomere repeat-binding protein | 0.26 | 0.40 |
| 263909_at | At2g36490 | HhH-GPD base excision DNA repair family protein (ROS1) | 0.16 | 0.24 |
| 264041_at | At2g03710 | SEP4 (Sepallata 4); identical to agamous-like MADS-box protein AGL3 (AGL3) | 0.12 | 0.10 |
| Transport | ||||
| 263402_at | At2g04050 | MATE efflux family protein, similar to ATDTX1, antiporter | 13.05 | 7.08 |
| 263401_at | At2g04070 | MATE efflux family protein, similar to ATDTX1, antiporter | 6.49 | 9.09 |
| 253732_at | At4g29140 | MATE efflux protein-related | 2.58 | 2.49 |
| 249188_at | At5g42830 | Transferase family protein, similar to N-hydroxycinnamoyl/benzoyltransferase 6 | 10.47 | 5.68 |
| 255941_at | At1g20350 | ATTIM17-1 (translocase mitochondrial inner membrane subunit 17-1) | 10.44 | 5.51 |
| 253181_at | At4g35180 | LHT7 (Lys/His transporter 7) | 6.44 | 8.49 |
| 265479_at | At2g15760 | Calmodulin-binding protein, similar to AR781 | 2.59 | 3.26 |
| 267483_at | At2g02810 | ATUTR1 (UDP-Gal transporter 1) | 2.45 | 2.34 |
| 265161_at | At1g30900 | Vacuolar sorting receptor 6 precursor (AtVSR6) | 2.33 | 3.60 |
| 254662_at | At4g18270 | ATTRANS11 (translocase 11) | 0.30 | 0.21 |
| 257294_at | At3g15570 | Phototropic-responsive NPH3 family protein | 0.15 | 0.03 |