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. Author manuscript; available in PMC: 2009 Oct 1.
Published in final edited form as: J Chem Inf Model. 2008 Jul 22;48(8):1602–1615. doi: 10.1021/ci800063v

Figure 2.

Figure 2

Autodock and Surflex accuracy: The dock with the lowest rmsd is presented, regardless of ranking. Parts A and C present the rmsd calculated without taking into account ligand or nucleic acid symmetry, for Autodock and Surflex, respectively. Parts B and D include ligand and nucleic acid symmetry, for Autodock and Surflex, respectively. Black = daunorubicin, blue = distamycin, red = ellipticine, green = pentamidine.