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. 2009 Jun 17;284(33):22222–22237. doi: 10.1074/jbc.M109.029850

TABLE 1.

Statistics for the ensemble of 10 structures calculated for SvtR

Constraints per monomer (residues 11–56)
    Unambiguous restraints 1233
    Ambiguous distance restraints 803
    Total number of distance restraintsa 2036
        Intra-residue |j-i| = 0 537
        Sequential |j-i| = 1 404
        Medium range 2 ≤ |j-i| < 4 370
        Long range |j-i| ≥ 4 227
        Inter-monomer 498
    Backbone dihedral ϕ angle restraints 30
    Total number of hydrogen bonds 27
    Inter-monomer hydrogen bonds 4
Residual distance constraint violations
    Number ≥ 0.3 Å 0
    Number ≥ 0.1 Å 50 ± 2
    Root mean square deviation from NOEs (Å) 0.0205 ± 0.0001
Residual dihedral angle constraint violations
    Number ≥ 5.0° 4
    Root mean square deviation from dihedrals (°) 10.3 ± 0.0001
Energies (kcal/mol)
    Total −2870 ± 53
    Van der Waals −276 ± 9
    Electrostatic −3572 ± 87
Mean of pairwise root mean square deviation (Å) (13–56)b
    Backbone atoms N, Ca, and C′ 0.24 ± 0.06
    Heavy atoms 0.72 ± 0.07
Ensemble Ramachandran plot (13–56)b
    Residues in most favored regions 86.3%
        Additionally allowed 12.4%
        Generously allowed 1.2%
Structure Z scores (13–56)b
    Second generation packing quality 3.9 ± 0.2
    Ramachandran plot appearance −4.4 ± 0.4
    Chi1/Chi2 rotamer normality −2.3 ± 0.2
    Backbone conformation −5.5 ± 1.2
Unsatisfied H-bond donors per dimerb 1.2
Unsatisfied H-bond acceptors per dimerb 0
Bumps per dimer (13–56)b 12.1

a Distance constraints used for structure calculations, which excluded fixed intra-residue distances.

b Values for the structured region (between residues 13 and 56).