TABLE 2.
Kinetic parameters for the hCBS-catalyzed reactions at varying homocysteine concentrations estimated by simulations
The reaction numbers correspond to those shown in Fig. 2.
Substrates | No. | Vmaxa | Km1, Km2b | v/[E] 10 μm Hcys | v/[E] 40 μm Hcys | Fold-changed | v/[E] 200 μm Hcys | Fold-changed |
---|---|---|---|---|---|---|---|---|
units/mg | mm | s−1c | s−1 | s−1 | ||||
Ser + Hcys | 1 | 5.1 ± 0.3 | 2.0 ± 0.3, 2.8 ± 0.5 | 185 × 10−4 | 700 × 10−4 | 3.8 | 2717 × 10−4 | 14.7 |
Cys | 2 | 0.46 ± 0.08 | 6.8 ± 1.7 | 6.4 × 10−4 | 6.4 × 10−4 | 0.99 | 6.1 × 10−4 | 0.96 |
Cys + Cys | 3 | 0.82 ± 0.08 | 6.8 ± 1.7, 27.3 ± 3.7 | 3.9 × 10−4 | 3.9 × 10−4 | 0.99 | 3.8 × 10−4 | 0.97 |
Cys + Hcys | 4 | 18.7 ± 2.6 | 6.8 ± 1.7, 3.2 ± 1.3 | 239 × 10−4 | 253 × 10−4 | 1.06 | 259 × 10−4 | 1.09 |
a One unit corresponds to 1 μmol of product formed min−1. The Km and Vmax values were determined as described under “Experimental Procedures” and reported in Table 1.
b In reactions involving two substrates, the order of the Km values reflects the substrate order in the 1st column.
c The values for the turnover numbers at varying concentrations of homocysteine and physiological concentrations of serine (560 μm) and cysteine (100 μm) were obtained as described under “Experimental Procedures” considering a ping-pong mechanism for the bimolecular reaction and the Hill coefficients (n) reported in Table 1.
d Fold change refers to the change in v/[E] with respect to normal conditions, i.e. 10 μm homocysteine, which is assigned a value of 1 for each reaction.