TABLE 3.
Regions of NF-E2 occupancy of major erythrocyte membrane protein genes in K562 chromatin, predicted by the Tamalpais peak calling algorithm
| Gene | Region | Locationa | Stringency level(s) |
|---|---|---|---|
| Ankyrin-1 | 1 | Intragenic (intron 1) | L4 |
| α-Spectrin | 2 | Intragenic (promoter/intron 1) | L4 |
| β-Adducin | 3 | 5′ Adjacent | L1 |
| 4 | Intragenic (intron 1) | L2-L3 | |
| 5 | Intragenic (intron 6) | L2-L3 | |
| α-Adducin | 6 | Intragenic (intron 1) | L4 |
| ERMAP | 7 | 5′ Adjacent | L4 |
| 8 | 3′ Adjacent | L4 | |
| 9 | Intragenic (intron 1) | L1 | |
| Protein 4.1R | 10 | Intragenic (intron 1) | L4 |
| 11 | Intragenic (intron 1) | L4 | |
| 12 | 5′ Adjacent | L1 | |
| 13 | 5′ Adjacent | L2-L3 | |
| Protein 4.2 | 14 | 5′ Adjacent | L1 |
| Dematin | 15 | Intragenic (intron 1) | L4 |
| Tropomodulin | 16 | 5′ Intergenic | L4 |
| 17 | 5′ Intergenic | L1 | |
| Tropomyosin | 18 | Intragenic (intron 1) | L4 |
a
Intragenic regions of NF-E2 binding are within an exon or intron. Adjacent regions of NF-E2 binding are within 10 kb of the 5′ or the 3′ end of the gene. Intergenic regions of NF-E2 binding are greater than 10 kb from the 5′ or 3′ end of the gene.