Table 4.
Sequence similarity of amoA from AOB phylotypes with GenBank entries (BLAST search)
| Phylotype | Enrichment culture | Closest relative in BLAST | |||||
|---|---|---|---|---|---|---|---|
| Nucleotide | Protein | ||||||
| Name | Similarity (%) | Environment | Name | Similarity (%) | Environment | ||
| 1-amoA | H6a-400 | Clone S6 (AF202649) | 85 | Anoxic biofilm | Clone S6 (AAF22967) | 96 | Anoxic biofilm |
| H1a-400 | Clone S6 (AF202649) | 85 | Anoxic biofilm | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| H6c-800 | Clone S6 (AF202649) | 85 | Anoxic biofilm | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| H6b-10 | Clone S6 (AF202649) | 85 | Anoxic biofilm | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| H6c-400 | Clone S6 (AF202649) | 85 | Anoxic biofilm | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| H6d-400 | Clone S6 (AF202649) | 85 | Anoxic biofilm | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| H0a-400 | Clone S6 (AF202649) | 85 | Anoxic biofilm | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| H6b-800 | Clone S6 (AF202649) | 85 | Anoxic biofilm | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| 2-amoA | H1a-400 | Clone Y35 (DQ437761) | 85 | Aerated landfill bioreactor | Clone S6 (AAF22967) | 95 | Anoxic biofilm |
| 3-amoA | H0a-400 | Clone Y35 (DQ437761) | 84 | Aerated landfill bioreactor | Clone S6 (AAF22967) | 96 | Anoxic biofilm |
| H6c-400 | Clone Y35 (DQ437761) | 84 | Aerated landfill bioreactor | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| H0a-200 | Clone Y35 (DQ437761) | 84 | Aerated landfill bioreactor | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| H0a-1,400 | Clone Y35 (DQ437761) | 84 | Aerated landfill bioreactor | Clone S6 (AAF22967) | 96 | Anoxic biofilm | |
| 4-amoA | H6c-400 | Clone Jul-amoA39 (DQ363653) | 92 | Submerged biofilm reactor | Clone RT-075_01 (ABF20600) | 96 | Soil |
| H6d-200 | Clone Jul-amoA39 (DQ363653) | 92 | Submerged biofilm reactor | Clone RT-075_01 (ABF20600) | 96 | Soil | |
| 5-amoA | H0a-200 | Clone Jul-amoA39 (DQ363653) | 92 | Submerged biofilm reactor | Clone RT-075_01 (ABF20600) | 97 | Soil |