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. Author manuscript; available in PMC: 2009 Oct 6.

Published in final edited form as: J Proteome Res. 2008 Sep 10;7(10):4566–4576. doi: 10.1021/pr800468j

Table 3.

L/H Peptide Ratios for the HB-Tag, Ubiquitin, and Specific Ubiquitin-Chain Types^a

	experiment 4		experiment 5
peptides	L/H ratio	StDev.	L/H ratio	StDev.
HB-tag	0.99	0.20 (n = 1368)	0.99	0.13 (n = 1611)
yeast ubiquitin	0.96	0.05 (n = 394)	0.99	0.04 (n = 307)
human ubiquitin	3.08	0.35 (n = 196)	0.34	0.05 (n = 269)
other ubiquitin	2.24	0.38 (n = 220)	0.37	0.10 (n = 472)
K6	2.92	n/a	0.21	n/a
K11	2.82	n/a	0.34	n/a
K27	6.12	n/a	0.24	n/a
K33	4.35	n/a	0.20	n/a
K48	2.43	n/a	0.42	n/a
K63	1.74	n/a	0.64	n/a

^a

n/a = not available.