. 2009 Sep 15;5:304. doi: 10.1038/msb.2009.53

Table 1.

List of candidate loci associated with AD from the 22 autosome of the AD SNP genotype data (Coon et al, 2007)

CHR	SNP ID	Location^a	Function	Gene	Gene ID	Effect
^aIn nucleotide basepair.
^bLoci remained in the model on logistic regression selection with a P-value<0.05.
^cLoci in homozygous regions containing candidate loci of recessive genetic lesion causing AD (Clarimón et al, 2008).
^dGenes are on known functional pathways and networks as revealed by the use of Ingenuity Pathway Analysis (Ingenuity Systems, www.ingenuity.com).
^eA SNP in Affymetrix 500K GeneChip, but without NCBI ID.
1	rs17325887^b,c	69998761	Intron	LRRC7^d	57554	Risk
1	rs7520521^c	70020703	Intron	LRRC7^d	57554	Risk
1	rs1913269^b,c	70052194	Intron	LRRC7^d	57554	Risk
1	rs10754339^b	117491795	mRNA–UTR	VTCN1^d	79679	Protect
1	rs16842422^b	196366613	–66918	LOC647195	647195	Protect
2	rs7582851	192032391	–392328	LOC647167	647167	Protect
3	rs6784615^b	52481466	Intron	NISCH^d	11188	Protect
4	rs9994615	40786592	Intron	APBB2^d	323	Risk
4	rs10015784^b	40793978	Intron	APBB2^d	323	Risk
5	rs1602843^b,c	86324342	0	COL24A1^d	255631	Risk
5	rs2913719^b	163947773	2403	LOC440700	440700	Protect
6	rs13213247^b	81572755	–91974	LOC729817	729817	Risk
6	rs16892285	81592721	–72008	LOC729817	729817	Risk
6	rs13193950	81593433	–71296	LOC729817	729817	Risk
6	rs156232^b	104979509	481535	LOC642337	642337	Risk
10	rs10827687^b	36999313	–39887	GRIK3^d	2899	Risk
10	rs10824310^b	53698470	Intron	PRKG1^d	5592	Risk
10	rs10740548	54877234	–2797	C1orf175^d	374977	Risk
11	rs1038891^b,c	40895642	0	RIMS3^d	9783	Risk
12	rs1354470^b	59088188	–32939	LOC645757	645757	Risk
12	rs7967572	73396068	51514	KRT8P21	126811	Risk
18	rs1785928^b	31979929	Coding non-synonymous	ELP2^d	55250	Risk
19	rs11879589	50065116	Intron	PVRL2^d	5819	Protect
19	rs4420638^b	50114786	Locus region	APOC1^d	341	Protect
19	^e	50150075
19	rs204907	50153836	Intron	CLPTM1^d	1209	Protect