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. 2009 Jan 6;18(3):549–558. doi: 10.1002/pro.54

Table I.

Crystallographic Data and Refinement Statistics

UVDE pH 4.4 UVDE K229L UVDE K229R UVDE E175A
Data collection
Beam line ESRF ID14-2 ESRF ID14-2 ESRF ID14-2 ESRF ID14-2
Detector MAR225 CCD MAR225 CCD MAR225 CCD MAR225 CCD
Resolution range (Å) 28.78–1.91 Å 37.11–2.30 Å 46.37–3.15 Å 40.46–2.74 Å
(2.01–1.91 Å)a (2.42–2.30 Å) (3.32–3.15 Å) (2.89–2.74 Å)
Multiplicity 6.4 (6.5) 11.3 (11.5) 10.7 (11.0) 4.4 (4.4)
Completeness (%) 99.2 (100) 99.2 (99.8) 95.3 (96.2) 99.3 (99.8)
Rmergeb (%) 0.048 (0.282) 0.078 (0.367) 0.134 (0.366) 0.087 (0.364)
Rpimc(%) 0.020 (0.113) 0.025 (0.122) 0.043 (0.117) 0.048 (0.203)
I/sigma 10.2 (2.0) 8.3 (2.0) 5.4 (2.0) 8.0 (2.0)
Space group P6122 P6122 P6122 P6122
No. of molecules in asymmetric unit 1 1 1 1
Unit cell parameters a/b/c (Å) 107.14 × 107.14 × 90.83 113.39 × 113.39 × 89.39 107.11 × 107.11 × 91.12 113.38 × 113.38 × 89.08
Crystallization condition 0.1M Ac pH 4.4 0.5M (NH4)2SO4 0.1M Ac pH 5.6 0.5M (NH4)2SO4
2M Naformate 0.1M Ac pH 6 1M Naformate 0.1M Ac pH 6
1 mM MnCl2 1M Li2SO4 1M Li2SO4
Molecular replacement
Correlation coefficent 0.613 0.658 NA 0.639
R factor of correct solution/second peak 0.515/0.643 0.442/0.625 NA 0.416/0.610
Refinement
No. of reflections used in refinement 22,835 14,615 5122 8773
Cutoff None None None None
Resolution range (Å) 28.78–1.91 Å 34.28–2.30 Å 46.18–3.15 Å 35.03–2.74 Å
(1.96–1.91 Å)a (2.36–2.30Å) (3.23–3.15 Å) (2.81–2.74 Å)
R factord 0.196 (0.286) 0.188 (0.198) 0.195 (0.232) 0.198 (0.295)
Rfreee 0.244 (0.363) 0.244 (0.278) 0.249 (0.360) 0.245 (0.363)
Ramanchandran statisticsf (%) 91.1/7.6/0.8/0.4 89.8/8.9/0.4/0.8 91.5/7.7/0.0/0.9 91.9/6.8/0.9/0.4
R.m.s. deviations (bonds, Å/angle, °)g 0.019/1.689 0.014/1.545 0.006/0.945 0.009/1.320
Average atomic B-factor for protein/Mn/solvent atoms 25.4/NA/33.0 30.6/65.2/30.6 32.6/NA/32.4 22.8/74.3/11.0
Wilson plot B-factor 25.0 35.9 54.4 47.3
a

Values in parentheses are for the highest resolution bin, where applicable.

b

Rmerge = Σ|I − 〈I〉|/Σ| I|.

c

Refs.13 and14.

d

R = Σ||Fobs(hkl) | − |Fcalc(hkl) || /Σ|Fobs(hkl) |.

e

About 5% of the reflections were used for the crossvalidation set. These reflections were randomly chosen.

f

According to the program PROCHECK15. The percentages are indicated of residues in the most favored, additionally allowed, generously allowed, and disallowed regions of the Ramachandran plot, respectively.

g

Estimates provided by the program REFMAC16.