Table I.
Crystallographic Data and Refinement Statistics
UVDE pH 4.4 | UVDE K229L | UVDE K229R | UVDE E175A | |
---|---|---|---|---|
Data collection | ||||
Beam line | ESRF ID14-2 | ESRF ID14-2 | ESRF ID14-2 | ESRF ID14-2 |
Detector | MAR225 CCD | MAR225 CCD | MAR225 CCD | MAR225 CCD |
Resolution range (Å) | 28.78–1.91 Å | 37.11–2.30 Å | 46.37–3.15 Å | 40.46–2.74 Å |
(2.01–1.91 Å)a | (2.42–2.30 Å) | (3.32–3.15 Å) | (2.89–2.74 Å) | |
Multiplicity | 6.4 (6.5) | 11.3 (11.5) | 10.7 (11.0) | 4.4 (4.4) |
Completeness (%) | 99.2 (100) | 99.2 (99.8) | 95.3 (96.2) | 99.3 (99.8) |
Rmergeb (%) | 0.048 (0.282) | 0.078 (0.367) | 0.134 (0.366) | 0.087 (0.364) |
Rpimc(%) | 0.020 (0.113) | 0.025 (0.122) | 0.043 (0.117) | 0.048 (0.203) |
I/sigma | 10.2 (2.0) | 8.3 (2.0) | 5.4 (2.0) | 8.0 (2.0) |
Space group | P6122 | P6122 | P6122 | P6122 |
No. of molecules in asymmetric unit | 1 | 1 | 1 | 1 |
Unit cell parameters a/b/c (Å) | 107.14 × 107.14 × 90.83 | 113.39 × 113.39 × 89.39 | 107.11 × 107.11 × 91.12 | 113.38 × 113.38 × 89.08 |
Crystallization condition | 0.1M Ac pH 4.4 | 0.5M (NH4)2SO4 | 0.1M Ac pH 5.6 | 0.5M (NH4)2SO4 |
2M Naformate | 0.1M Ac pH 6 | 1M Naformate | 0.1M Ac pH 6 | |
1 mM MnCl2 | 1M Li2SO4 | 1M Li2SO4 | ||
Molecular replacement | ||||
Correlation coefficent | 0.613 | 0.658 | NA | 0.639 |
R factor of correct solution/second peak | 0.515/0.643 | 0.442/0.625 | NA | 0.416/0.610 |
Refinement | ||||
No. of reflections used in refinement | 22,835 | 14,615 | 5122 | 8773 |
Cutoff | None | None | None | None |
Resolution range (Å) | 28.78–1.91 Å | 34.28–2.30 Å | 46.18–3.15 Å | 35.03–2.74 Å |
(1.96–1.91 Å)a | (2.36–2.30Å) | (3.23–3.15 Å) | (2.81–2.74 Å) | |
R factord | 0.196 (0.286) | 0.188 (0.198) | 0.195 (0.232) | 0.198 (0.295) |
Rfreee | 0.244 (0.363) | 0.244 (0.278) | 0.249 (0.360) | 0.245 (0.363) |
Ramanchandran statisticsf (%) | 91.1/7.6/0.8/0.4 | 89.8/8.9/0.4/0.8 | 91.5/7.7/0.0/0.9 | 91.9/6.8/0.9/0.4 |
R.m.s. deviations (bonds, Å/angle, °)g | 0.019/1.689 | 0.014/1.545 | 0.006/0.945 | 0.009/1.320 |
Average atomic B-factor for protein/Mn/solvent atoms | 25.4/NA/33.0 | 30.6/65.2/30.6 | 32.6/NA/32.4 | 22.8/74.3/11.0 |
Wilson plot B-factor | 25.0 | 35.9 | 54.4 | 47.3 |
Values in parentheses are for the highest resolution bin, where applicable.
Rmerge = Σ|I − 〈I〉|/Σ| I|.
R = Σ||Fobs(hkl) | − |Fcalc(hkl) || /Σ|Fobs(hkl) |.
About 5% of the reflections were used for the crossvalidation set. These reflections were randomly chosen.
According to the program PROCHECK15. The percentages are indicated of residues in the most favored, additionally allowed, generously allowed, and disallowed regions of the Ramachandran plot, respectively.
Estimates provided by the program REFMAC16.