Table 2.
Details of 23 genes of secondary metabolisms in Eucalyptus sequenced for SNP detection
| Length (bp)a | |||||||
| Gene | aa identity (%)b | Exon | Intron | Total | Pathway | Coverage (%) | Coverage |
| dxr | 75 | 652 | 1440 | 2092 | MEP | 80 | E1-E6 |
| dxs1 | 83 | 1158 | 668 | 1826 | MEP | 57 | I4-E10 |
| dxs2 | 82 | 588 | 184 | 772 | MEP | 30 | E5-E7 |
| hds | 75 | 2001 | 2997 | 4998 | MEP | 93 | E1-E17 |
| hdr | 83 | 1218 | 1982 | 3200 | MEP | 100 | E1-E10 |
| hmgr | 73 | 890 | 1573 | 2463 | MVA | 75 | E1-E2/E6-E12 |
| mvk | 62 | 1016 | 2023 | 3039 | MVA | 100 | E1-E5 |
| pmd | 76 | 484 | 1472 | 1956 | MVA | 59 | E1-E4 |
| ipp | 83 | 598 | 1138 | 1736 | TPS | 76 | E2-E6 |
| ggpps | 73 | 731 | 448 | 1179 | TPS | 90 | E1-E2 |
| psy1 | 80 | 742 | 819 | 1561 | TPS | 80 | E1-E4 |
| psy2 | 75 | 617 | 882 | 1499 | TPS | 80 | E1-E4 |
| psy3 | 85 | 423 | 733 | 1156 | TPS | 40 | E4-E6 |
| gpps | 63 | 568 | 4123 | 4691 | TPS | 75 | E3-E8/E9-E10 |
| fpps | 73 | 910 | 2563 | 3473 | TPS | 100 | E1-E12 |
| smo | 78 | 1486 | 861 | 2347 | TPS | 100 | E1-E7 |
| chs | 66 | 1126 | 362 | 1488 | FLAV | 100 | E1-E2 |
| chi | 70 | 808 | 357 | 1165 | FLAV | 100 | E1-E3 |
| f3h | 72 | 1055 | 963 | 2018 | FLAV | 100 | E1-E3 |
| dfr | 72 | 921 | 1439 | 2360 | FLAV | 100 | E1-E6 |
| larc | 65 | 569 | 2097 | 2666 | FLAV | 80 | E1-E4 |
| ans | 71 | 952 | 216 | 1168 | FLAV | 100 | E1-E2 |
| anr | 68 | 534 | 545 | 1079 | FLAV | 63 | E1-E4 |
| sum | 75 | 20047 | 29885 | 49932 | 81 | ||
a The length of sequence for exons, introns and the total are shown, the assigned pathway, an estimation of the proportion of the full length of the gene that was sequenced, the coverage of the gene, as compared to A. thaliana.
b Compared to A. thaliana
c lar is compared to P. trichocarpa as it does not exist in A. thaliana