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. Author manuscript; available in PMC: 2010 Jan 1.
Published in final edited form as: Nat Protoc. 2009 May 21;4(6):902–922. doi: 10.1038/nprot.2009.61

Table 1.

Representative total RNA quantity and quality from microdissected frozen tissue samples a.

Tissue Neoplastic Status # LCM Shots Total RNA Quantity (ng/ul) Total RNA Quality (RINb)
Epithelium: Range = 8.4 – 20.42 Range = 4.2 – 7.8
Breast Normal 2000 12.29 7.6
Tumor 3000 13.51 7.8
Colon Normal 3000 13.2 4.2
Tumor 3000 12.57 6.5
Esophagus Normal 4000 16.59 5.1
Tumor 3700 20.42 4.5
Prostate Normal 3000 8.4 6.2
Tumor 3000 10.8 5.6
Urethra Normal 2000 13.87 6.1
Stroma: Range = 4.81 – 8.86 Range = 4.8 – 6.9
Breast Normal 3000 6.53 6.8
Tumor 2400 8.86 6.5
Prostate Normal 20,000 6.65 6.9
Tumor 20,000 6.37 5.7
Urethra Normal 3000 4.81 4.8
a

This data was generated at the Pathogenetics Unit, NCI and is representative of frozen microdissected total RNA from these tissues.

b

RIN = RNA Integrity Number. Algorithm assigning value to RNA quality, as calculated by Bioanalyzer 2100 (Agilent, Inc.).