Table 1.
Representative total RNA quantity and quality from microdissected frozen tissue samples a.
| Tissue | Neoplastic Status | # LCM Shots | Total RNA Quantity (ng/ul) | Total RNA Quality (RINb) |
|---|---|---|---|---|
| Epithelium: | Range = 8.4 – 20.42 | Range = 4.2 – 7.8 | ||
| Breast | Normal | 2000 | 12.29 | 7.6 |
| Tumor | 3000 | 13.51 | 7.8 | |
| Colon | Normal | 3000 | 13.2 | 4.2 |
| Tumor | 3000 | 12.57 | 6.5 | |
| Esophagus | Normal | 4000 | 16.59 | 5.1 |
| Tumor | 3700 | 20.42 | 4.5 | |
| Prostate | Normal | 3000 | 8.4 | 6.2 |
| Tumor | 3000 | 10.8 | 5.6 | |
| Urethra | Normal | 2000 | 13.87 | 6.1 |
| Stroma: | Range = 4.81 – 8.86 | Range = 4.8 – 6.9 | ||
| Breast | Normal | 3000 | 6.53 | 6.8 |
| Tumor | 2400 | 8.86 | 6.5 | |
| Prostate | Normal | 20,000 | 6.65 | 6.9 |
| Tumor | 20,000 | 6.37 | 5.7 | |
| Urethra | Normal | 3000 | 4.81 | 4.8 |
This data was generated at the Pathogenetics Unit, NCI and is representative of frozen microdissected total RNA from these tissues.
RIN = RNA Integrity Number. Algorithm assigning value to RNA quality, as calculated by Bioanalyzer 2100 (Agilent, Inc.).