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. Author manuscript; available in PMC: 2009 Oct 13.
Published in final edited form as: Proteins. 2008 Sep;72(4):1171–1188. doi: 10.1002/prot.22005

Figure 2.

Figure 2

The per-residue local quality score of the model for protein 1urr (PDB entry name) is plotted as a function of residue number. Three normalized, residue-based scoring functions are used in the local quality assessment including the DFIRE potential, inverse Born radius (IBR)-based environmental potential and tabulated soft-core van der Waals potential. The local quality scores before and after side chain repacking are shown in magenta and black, respectively. The dotted line in blue denotes the cutoff used for the local quality score, a value of 2.0.