Table 2.
Summary of the synteny blocks between the B. rapa genetic map and the Arabidopsis genome sequence deduced from BAC alignment
| Arabidopsis chromosome | No. of B. rapa BACs aligned | B. rapa linkage groups aligned (cM) | Total length of B. rapa linkage groups aligned | Total length of Arabidopsis genome aligneda |
Length of Arabidopsis genome covered by the alignment (% coverage) |
Total length of Arabidopsis chromosomeb |
| 1 | 43 | A6 (32.0), A7 (49.1), A8 (27.3), A9 (12.1), A10 (8.5) | 129.0 cM | 21.6 Mb | 13.7 Mb (45%) | 30.4 Mb |
| 2 | 36 | A3 (12.5), A4 (30.5), A5 (35.1), A6 (2.8), A9 (7.9) | 88.7 cM | 17.9 Mb | 10.0 Mb (51%) | 19.7 Mb |
| 3 | 59 | A1 (24.4), A3 (5.7), A4 (25.7), A5 (38.8), A6 (8.5), A7 (9.6), A9 (10.9) | 123.6 cM | 33.4 Mb | 16.9 Mb (72%) | 23.5 Mb |
| 4 | 30 | A1 (50.4), A3 (36.5), A8 (37.7) | 124.6 cM | 24.2 Mb | 10.1 Mb (54%) | 18.6 Mb |
| 5 | 16 | A2 (32.2), A3 (2.4), A9 (1.4), A10 (33.1) | 69.1 cM | 14.6 Mb | 9.9 Mb (37%) | 27.0 Mb |
| Total | 184 | 534.9 cM (48%) | 111.7 Mb | 60.5 Mb (51%) | 119.2 Mb | |
aDetails of redundantly represented regions in the B. rapa genome are in Table 5.
b[51]