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Analysis of selected Tg6 torsion angles and internucleotide distances during the 10 ns rMD trajectories carried out in explicit solvent. (A) The Tg6 CH3−C5−C6−H6 torsion angle. (B) The Tg6 O4′−H1′−N1−C2 torsion angle. (C) The Tg6 HO5→G7 N7 distance. (D) The Tg6 HO6→G7 N7 distance. (E) The Tg6 H3→A19 N1 distance. (F) The rmsd of backbone heavy atoms for the entire duplex.
