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. Author manuscript; available in PMC: 2009 Oct 14.
Published in final edited form as: AIDS Res Hum Retroviruses. 2006 Aug;22(8):817–823. doi: 10.1089/aid.2006.22.817

Figure 1.

Figure 1

Each tree depicts the evolution of nef in a single macaque at four, twelve and twenty weeks (open circle, triangle and square, respectively) including the SIV17E-Fr (filled, inverted triangle) as a root and SHIVKU1B (filled diamond) and SHIV89.6P (filled square) as references. The three rapid progressor, morphine-dependent monkeys (1/04L, 1/28Q, and 1/42N) are included in Group A. These animals all died by the 20th week post infection. The three normal progressor, morphine-dependent macaques (1/02N, 1/52N, and 1/56L) are included in Group B. Finally, the normal progressor, non-morphine controls (2/02P and 2/31P) are included in Group C. Bootstrap values (150 repetitions) over 70 are provided at tree nodes. The average overall diversity is given as a percentage in bold under the monkey name in each tree. The scale bar in each tree represents 0.2% distance.