Table 2.
VNTR loci and primers used for their amplification a
| Locus | Core sequence | Repeat unit size (bp) | Forward and Reverse primer (5'-3') |
|---|---|---|---|
| M76 | TGTGGTGATCTAAGCGCAACACA GTTAAAAACAGATTTTAA |
41 | F:GCGGCCTGATAAGGGATATTGGAAGC R:GGCGAAATTCATTAAAGAGGATCCTGACAC |
| M73 | AATGCCTATTCCTCTGACAGAAT CCGTATC |
30 | F:GCTTTCTGGCAATGCGATAGTTAGGCATCTC R:GTTAATTTAACTCAATATTGTCGCTATGGT |
| M72 | TTCATAGCTTCTATTATAGAGA | 22 | F:GCGACACGCCCTTTCAATGAGATACAC R:GTAGATCACCGCTAAATGCGAAGGTCCAC |
| M66 | ATTTACGGTATAGCTACTGA | 20 | F:GAGATGGATTAACCAGATGTCTTAAAAACTATCGTAAC R:GCGAATCGGCGGCCCAAAC |
| M61 | TTTCAAGCTGAATGTGTG | 18 | F:GCGCCACAATTAGGGCAACTGC R:GCCGCTTTAATGGTTTGTGAAATGAC |
| ms01 | TGCAGTGAAAAGGTTAAC | 18 | F:CTAAGCACAATTGTTATGCTGAACC R:TACTGAATCTGCTTCATTGTTCAAA |
| M59 | TTACTGATATGGGCTAG | 17 | F:GCTTAGCCGCCAGAAAAGGTGAGTTGGC R:GATAATGGCGGTAGCCGGAATCTGATAATCATC |
| M58 | CATAGATAGCTAAACAA | 17 | F:GCGATAACCCACATTATCACAATAACCAACAC R:GCTGATGGAACCGGTATGCTGAATTTGC |
| M55 | TATTGAGGAATGAATG | 16 | F:GTCATGGGTGATGCTGTTGCTCTCATTTTATAGTTGTAGTGA R:GCCTTAATGGTTGAATGCGCGAATGAGTCAGATAAC |
| M54 | TTTATGGTTCAACTTG | 16 | F:GTATGCTTAGCGCCAGTGATAACGAGTC R:GATCGCGTCATCGGGGTTTGTC |
| M52 | GTTGTAAAACCAGAT | 15 | F:GTGGCCTAACCCGTTTTACCGGTGTAGC R:GCGGTTTTGTCAATCACGAATCAGGACTC |
| M51 | TTATCACGGTTGGTG | 15 | F:GCAACCCGCTGAAGTTGTAAAAACCGAC R:GCGTTGATCTTCGCGGCCTTCAC |
| M49 | TTGTAACGACTGAT | 14 | F:GTAATACTTACGCCTTGGCAGCAGTGTTCACGAC R:GTGGGGTGTTCTACGGTGGATTGTTTTTAGGC |
| M37 | ACTATCACCG | 10 | F:GCCACAGGAAGAGGACATTTCAGAGAAAAC R:GTTGCTAAAACGATACCGCTACGATCAGC |
aAll the primers used here were described in reference 12, except ms01, which was from reference 17.