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. Author manuscript; available in PMC: 2009 Oct 15.
Published in final edited form as: Curr Opin Biotechnol. 2009 Mar 13;20(2):149–157. doi: 10.1016/j.copbio.2009.02.002

Table 1. Current Status of Genome Sequencing for Salmonellae.

Sequences Completed Method Sequencing Center GenBank Accession # Citation
* Arizonae 62:z4,z23:-- ABI WU CP000880.1
Agona SL483 ABI JCVI CP001138.1
Choleraesuis SC-B67 ABI Taiwan AE017220.1 [7]
Dublin CT_02021853 ABI TIGR CP001144.1
Enteritidis P125109 ABI Sanger AM933172.1 [8]
Gallinarum 287/91 ABI Sanger AM933173.1 [8]
Heidelberg SL476 ABI JCVI CP001120.1
Newport SL254 ABI TIGR/JCVI CP001113.1
Paratyphi A ATCC 9150 ABI WU CP000026.1 [5]
Paratyphi B SPB7 SGSC4150 ABI WU CP000886.1
Schwarzengrund CVM19633 ABI TIGR CP001127.1
Typhi E98-0664/Kenya 1998i 454 Sanger NZ_CAAU00000000 [9]
Typhi 150(98)S/Vietnam 2004 Illumina GS Sanger [9]
Typhi 404ty/Indonesia 1983 454/Illumina GS Sanger NZ_CAAQ00000000 [9]
Typhi 8(04)N/Vietnam 2004 Illumina GS Sanger [9]
Typhi AG3/Vietnam 1998 454/Illumina GS Sanger NZ_CAAY00000000 [9]
Typhi CT18/Vietnam 1993 ABI
Illumina GS
Sanger AL513382.1 [4]
[9]
Typhi E00-7866/Morocco 2000 454 Sanger NZ_CAAR00000000 [9]
Typhi E01-6750/Senegal 2001 454 Sanger NZ_CAAS00000000 [9]
Typhi E02-1180/India 2002 454 Sanger NZ_CAAT00000000 [9]
Typhi E02-2759/India 2002 Illumina GS Sanger [9]
Typhi E03-4983/Indonesia 2003 Illumina GS Sanger [9]
Typhi E03-9804/Nepal 2003 Illumina GS Sanger [9]
Typhi E98-2068/Bangladesh 1998 454 Sanger NZ_CAAV00000000 [9]
Typhi E98-3139/Mexico 1998 454/Illumina GS Sanger NZ_CAAZ00000000 [9]
Typhi ISP-03-07467/Morocco 2003 Illumina GS Sanger [9]
Typhi ISP-04-06979/Africa 2004 Illumina GS Sanger [9]
Typhi J185SM/Indonesia 1985 454 Sanger NZ_CAAW00000000 [9]
Typhi M223/Unknown 1939 454 Sanger NZ_CAAX00000000 [9]
Typhi Ty2 Russia 1916 ABI
Illumina GS
U Wisconsin
Sanger
AE014613.1 [6]
[9]
Typhimurium LT2 ABI WU AE006468.1 [3]
Sequencing In Progress
* Arizonae 05-0715 ATCC BAA-1577 454 WU -
* Diarizonae 61:1,v:1,5 ABI WU -
* Diarizonae ATCC BAA-1579 05-0625 48:i:z 454 WU -
* Houtenae SARC13 ATCC BAA-1580 45:a:e,n,x 454 WU -
* Houtenae SARC14 ATCC BAA-1581 11:b:e,n,x 454 WU -
* Indica ATCC BAA-1576 ABI WU -
* Indica ATCC BAA-1578 ABI WU -
* Salamae ATCC BAA-1583 (05-0626) 47:b:1,5 454 WU -
* Salamae SARC3 58:d:z6 454 WU -
* Salmonella bongori 12149 ABI Sanger -
4,[5],12:i:- CVM23701 ABI TIGR NZ_ABAO00000000
Abortusovis SSM0041 454 WU -
Bovismorbificans 01-05481 PT13 454 WU -
Braenderup S-500 454 WU -
Brandenburg KMR12 ABI Korea -
Dublin ABI U Illinois -
Enteritidis 48-0811 Illumina GS WU -
Enteritidis LK5 ABI U Illinois -
Enteritidis SARB17 454 WU -
Enteritidis SARB19 Illumina GS WU -
Hadar ABI Sanger
Hadar RI_05P066 ABI TIGR/JCVI NZ_ABFG00000000
Heidelberg SL486 ABI TIGR/JCVI NZ_ABEL00000000
Indiana KMR53 ABI Korea -
Infantis ABI Sanger
Infantis SARB27 454 WU -
Javiana GA_MM04042433 ABI JCVI NZ_ABEH00000000
Kentucky CDC 191 ABI JCVI NZ_ABEI00000000
Kentucky CVM29188 ABI TIGR NZ_ABAK00000000
Miami ATCC BAA-1586 (02-3341) 454 WU -
Montevideo SARB30 454 WU -
Muenchen SARB32 454 WU -
Muenchen SARB34 454 WU -
Muenster ATCC BAA-1575 (0065-00) ABI WU -
Newport CVM36720 ABI UMIGS -
Newport SL317 ABI JCVI NZ_ABEW00000000
Panama KMR64 ABI Korea -
Paratyphi A AKU_12601 ABI Sanger FM200053.1
Paratyphi B ATCC BAA-1585 ABI WU -
Paratyphi B SARB47 454 WU -
Paratyphi B tartrate (+) [Java] ATCC BAA-1584 (S-1241) 454 WU -
Paratyphi C RKS4594, SARB49 ABI
Illumina GS
Peking University
WU
-
-
Poona SGSC4934 454 WU -
Pullorum ABI U Illinois -
Saintpaul SARA23 ABI TIGR NZ_ABAM00000000
Saintpaul SARA29 ABI TIGR NZ_ABAN00000000
Schwarzengrund KMR78 ABI Korea -
Schwarzengrund SL480 ABI JCVI NZ_ABEJ00000000
Sendai 55-2461 454 WU -
Senftenberg SARB59 454 WU -
Stanley SARB60 454 WU -
Tennessee CDC07-0191 ABI CDC NZ_ACBF00000000
Thompson SARB62 454 WU -
Typhi SGSC2661 Illumina GS WU -
Typhi Ty21a ABI Naval Med. Res. Center -
Typhimurium 14028s 454 WU -
Typhimurium D23580 ABI Sanger -
Typhimurium DT104 ABI Sanger -
Typhimurium DT2 ABI Sanger -
Typhimurium SL1344 ABI Sanger -
Virchow SL491 ABI TIGR/JCVI NZ_ABFH00000000
Weltevreden HI_N05-537 ABI TIGR/JCVI NZ_ABFF00000000
*

All sequences are from Salmonella enterica subspecies enterica except the marked strains, which are from other subspecies and Salmonella bongori.

WU = Washington University, St. Louis. Sanger = Wellcome Trust Sanger Institute. JCVI = J. Craig Venter Institute, UMIGS = University of Maryland

ABI – Sequencing of large fragments by the Sanger Method, using automated detection of an ABI DNA sequencer.

454- 454 Sequencing- (Roche) – sequencing of short fragments attached to beads by sequencing based on synthesis.

Illumina GS- Massively parallel sequencing of millions of fragments using proprietary terminator based sequencing chemistry.

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